Dnig010172.1
Basic Information
- Insect
- Drosophila nigromelanica
- Gene Symbol
- -
- Assembly
- GCA_004149445.1
- Location
- SCDR01001067.1:1874-5627[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0056 0.67 11.1 0.6 2 23 143 165 142 165 0.90 2 9 8.8e-06 0.0011 19.9 2.5 2 23 179 201 178 201 0.96 3 9 0.16 19 6.5 8.8 2 23 480 501 480 501 0.97 4 9 9.2e-07 0.00011 23.0 2.8 1 23 507 530 507 530 0.96 5 9 0.00013 0.015 16.3 0.5 1 23 535 558 535 558 0.96 6 9 4.8e-05 0.0057 17.6 5.5 1 23 576 598 576 598 0.96 7 9 7.4e-05 0.0088 17.0 1.2 1 23 603 625 603 625 0.98 8 9 2.5e-05 0.003 18.5 1.7 1 23 631 653 631 653 0.95 9 9 1.3e-06 0.00016 22.5 0.4 1 23 659 681 659 681 0.98
Sequence Information
- Coding Sequence
- ATGCCTGACAGCTGCGGTCAGTTCGATGCGGAGCGCGTCTGTCGCGTTTGCCTACGCGAGGTGGGCGATTTCTACTTCATCTACGATGAGGCGCCAGTGGAGCAGGGCGCAAACATTGCCCAGATACTTAACGAGTGTACGCGCTACACCTGCGAGCGTTACGACAAGTTGCCGCATTACATGTGCGACACGTGCATCAAGGCCGCCTGCCAGGCGTATCGCTTCAAGCTGGACGCGGAGAAGGCCTATCGCTCGCTAGTGGCCATCCTGGGGTGCACACCCGTCACCACGCCCAACAGCAGCGAGGTGTGCACCCAGACAGAGCAGGTGGCGATGCTGCCGTGCGACATCTGCAACGATGAATTTCTCAACATTCTTGAGCTGCGACTGCATCGCAATCGCCAGCACAAGCACATGGAGCAGCTCAAGTGTAAGCTGTGCGACGAGCAGTTCCAGCAAATACGCCAGCTGCGCAACCATCTCGTGGAGCAGCACGATCAACAGGCGACAGCGTCGTTGCTGCACCGGCGTCTGGAGTGTCGCCTCTGCCAGCGCTCCTTTGTCCGGCGCGATCATATGCTGCGCCATATGCGCACCGTCCACAATGCTGATGACGGGGATCGGCTGGTCCGGTCGCCGGCCGAGCAGCAGGTAGTTCAGTCTGAAGCGAACTGGCCGCCCATCGACGAAGCGACCATGCACAGTGGCGACGAACTGGAGTCGGCTGCCATTATATACAATGAGGCGGCTTGTTCCGACGACGATGAGAACGTTAACTGCGAGAGCGGCTATCAATGCCATACAACGAATCCCATATCAAGCAATGAGGAAGCTGACGACGAAGACGTCCATGCCGAGGCTAAAGAAACACTCTGGCTACACATTAAACCAGAACCTGAAGCGGAAACGGATCTGGAGCAATGCCCGACGCAAGCATATCGCGAGAAGCGCAGGAAAAAAGCAAATCTAAAACCTGCCACCCACACTGACACGGAGGACGAGCATGAGAGTGAAGACATGCAGAAAACCACGTCCACTGTTTTAACTGCGGAGGTTAAAGAGGAGCCTCTGCTCACTGGCGGCGAGCTACAATTGTCTATAAAGCAGGAGCGACAGCTCGTTGACAGCATTAAAGAGGATGAGGACGAAATGGAGGCGCCAATAGCTAACGTTTCACAAAGTGCAGATGAGGATGAAGACGGGGAAGAATTTGGCAATGCGGAGAGCGACATTTTTCAGgaggatgacgatgacgacgacgacgatgataaCGAAGAGGAAGACGAACCGGATGCAGATCTGGAGGCATATGCCGAGGACAAAACTCAGGTGGCTAAAGTGGAAATTGTGCGCGAGTATCTGGAGAAGCCAACACCTGGCAAACAGCGACGTCGTCGACGCAAAAAACCGAGCGATGCGCAACCGAATCCGGAGAATCGCTGCGATATCTGCATGCGCACATTTTCCCGTCATTGCCACTTGTTGCGCCACAAACTGTCGCATTTGGAAAAGAAGCCGCACAGCTGTCCGCACTGCCCGAAGGCGTTTGCCCGCAGCGATCATTTGAAGGCGCACGTGCAGAGCCTGCACGGCAACAAGGAGCACAAATGCGTGCTGTGCGAGGCAGCGTTTTCCCGCCCCGACGCCCTCGAGCGGCACAAGATGAGCAAGCACAATGGCGAGGGCCTGGACGCCAGCAGTGAACTGAAGCTGCAGATGAGCGAGCACACGTGCGAATACTGCTCGAAGCGGTTCTCCAGCAAGACGTACCTGCGCAAGCACACGCTGCTCCATACCGAATTCCTGTACGCGTGCAAGAGCTGCGATGAGACATTCAAGGAGCGCCAGGAGTTGCGTAACCACGAGAAGACGCACACCGGACAGCGCAATTTCCTCTGTTGCATTTGCGGCGACAGTTTTGCGCGCAACGATTACCTGCGCGTCCATATGCGGCGGCACAACGGCGAAAAGCCATACAAGTGCCGTTACTGCGACAAGGCATTTCCACGCGCTACAGATCTCAAGGTACATGAGCGTGCCCACAACAAGCACATTGAGACCAAAACGGGTCGCCTGCAGCGCACCGGCCTGCTGGACGAGCCCAATCATGCGCATCTGACCACTGTGCTAATGCCACCGACTCGTTTTCAACAGCAGTCAACGCCGGATCCGCAAACGCAGCTGCCGGCAACGTCGGCACCGCCAATTGTAACGCCAATTCTGCATTCGCCGGTCACGTACAGTACAACGTCGCCAGTGTCCGTGTCCGTTCAAGTGCCGGATGCTGCCGGATTTGTGGGTGCGGCAAATAGCGCAACAGCTACCGCGACAGCGCCCTTTGGGGCATTTAACATAGCGCCCGTGGTGATGGCGCATCTCATGTACAATCATGGCGGCAACAGCCAACAGAGCAACACCAGCGGCAGCGAGGCGGGAAAATAG
- Protein Sequence
- MPDSCGQFDAERVCRVCLREVGDFYFIYDEAPVEQGANIAQILNECTRYTCERYDKLPHYMCDTCIKAACQAYRFKLDAEKAYRSLVAILGCTPVTTPNSSEVCTQTEQVAMLPCDICNDEFLNILELRLHRNRQHKHMEQLKCKLCDEQFQQIRQLRNHLVEQHDQQATASLLHRRLECRLCQRSFVRRDHMLRHMRTVHNADDGDRLVRSPAEQQVVQSEANWPPIDEATMHSGDELESAAIIYNEAACSDDDENVNCESGYQCHTTNPISSNEEADDEDVHAEAKETLWLHIKPEPEAETDLEQCPTQAYREKRRKKANLKPATHTDTEDEHESEDMQKTTSTVLTAEVKEEPLLTGGELQLSIKQERQLVDSIKEDEDEMEAPIANVSQSADEDEDGEEFGNAESDIFQEDDDDDDDDDNEEEDEPDADLEAYAEDKTQVAKVEIVREYLEKPTPGKQRRRRRKKPSDAQPNPENRCDICMRTFSRHCHLLRHKLSHLEKKPHSCPHCPKAFARSDHLKAHVQSLHGNKEHKCVLCEAAFSRPDALERHKMSKHNGEGLDASSELKLQMSEHTCEYCSKRFSSKTYLRKHTLLHTEFLYACKSCDETFKERQELRNHEKTHTGQRNFLCCICGDSFARNDYLRVHMRRHNGEKPYKCRYCDKAFPRATDLKVHERAHNKHIETKTGRLQRTGLLDEPNHAHLTTVLMPPTRFQQQSTPDPQTQLPATSAPPIVTPILHSPVTYSTTSPVSVSVQVPDAAGFVGAANSATATATAPFGAFNIAPVVMAHLMYNHGGNSQQSNTSGSEAGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00547491;
- 90% Identity
- -
- 80% Identity
- -