Dnig010053.1
Basic Information
- Insect
- Drosophila nigricruria
- Gene Symbol
- -
- Assembly
- GCA_037075265.1
- Location
- JBAMCI010000150.1:2239103-2241585[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.8e-05 0.002 18.6 2.4 1 23 96 118 96 118 0.97 2 14 0.011 0.82 10.4 5.3 1 23 124 146 124 146 0.96 3 14 3.9e-05 0.0028 18.1 0.7 1 23 152 174 152 174 0.98 4 14 8.9 6.4e+02 1.3 1.8 2 13 181 192 180 194 0.87 5 14 1.8e-05 0.0013 19.2 0.1 2 23 198 219 197 219 0.97 6 14 0.0038 0.27 11.9 3.5 1 23 225 247 225 247 0.98 7 14 0.0069 0.49 11.1 4.3 1 20 253 272 253 273 0.95 8 14 4.8 3.4e+02 2.1 2.3 1 19 415 433 415 436 0.82 9 14 0.00025 0.018 15.6 3.1 2 23 451 472 450 472 0.96 10 14 0.0025 0.18 12.5 6.1 1 23 491 513 491 513 0.98 11 14 0.012 0.86 10.3 3.2 1 23 523 545 523 545 0.95 12 14 9.2e-05 0.0066 17.0 5.8 1 23 551 573 551 573 0.97 13 14 3.7e-07 2.6e-05 24.5 1.5 1 23 579 601 579 601 0.98 14 14 0.0028 0.2 12.3 9.4 1 23 607 629 607 629 0.98
Sequence Information
- Coding Sequence
- ATGAACGCCATCATCGACGTGTCCTGTGTGAAAATAGAGCCCGACCAGGAACCGGAGCTGCAGCAGGAGTTCTACGGCGTCTCAAAGGACGCCAATTGTGCTCAGCTGGAAACTGAATTACCTTTCACAGAGATGGACATAGGACCGATTAAAATAGATCCGGATGGGTTGAGAGAAGAGCCAGTAGTCAAGGAGCCAAGTGCTCAAACGGAGCCTCCAAAGACTCGCAAGCGGAAGAaagctgccgcagcagcaacgccCTCCTCGACTGTCGTCAAAGGAGTGCATCAGTGCCCGCATTGTCCACGGCATTTCGAGCGCAGCGATGAGCTGGACATACACCTGCTAATCCACACAGATAAACTATCCTACAAGTGTTCGCACTGCCCGAGCAGCTTCTCGCACAAATCCATCTACACAAGCCACATGTATGGACATACGGGGAAGTTTCCACATCAGTGCCCTGACTGTCCGCAAGGCTATATGAAATTTGCCGATCTGATAAAGCATCAGCGCACGCATATCGTCAAGGACCAGAAGAAGTGCCCTTTGTGCCCCAGGAATTGCATACATAAGGGCAAGAGCTTCCTCGAATGTCCGCAATGTCCGCGCGTCTTTGCCAAAAGCTTCGAGCTGCAGATTCATCTGCAGATCCACAGCAACAAGTTGGCCTACAAGTGTCCATATTGCTCGGACAGCTTTGCCCACAAATCGAATCATACGGCGCACGTTCGCGAGCATACGGGcgaatttaaatacaaatgccCTCATTGTGGGCGGGGATACATGAAGCGAGATAATTTTTTTGATCACAAATGCCCTTACAACAGCTTACATCAGAGTAAAGATGGAGCTATGGCCACCACATATGCCAACTGCACTGAAATGGAACGCTTGAAGCTAGCGAGGCAATGCGAAGTTCTGTCAAAACCAAAACCCGTGAGGCCTCAAGTTCAAAGAAGAGTCAGTCCAAGAGTCAATAAGCCAACACTGGAATTGAAAACAGCAGAGAGCATAAAAGAAACGAGAAaggagaagcagcagcagcaatccgTAAAGAAAGACAGTCCCTTGGTGAACATGAATAGTAAACATGATTCAAAGCTGAGATCCATCAAATCCGAGCCAGCGGAGGAAGAGGAGCAGAGCAAACCTAAGCAGCAGACTTTAAATGTTAACTCAAGACTCGCAGCTAGCAAAGCTGTCGAGCAGCCTGCTGTGAGAGTCAATAAAAAACGCACCCATACATGCAATATATGCAGCAAGGAAATTTGTAACTTCAAGGAGCAGCAACTGCATGCAAAATACTGCACTCCGGCGAACAGGCAAAGAGCAGAAAAACCTCCGTGTGAATGTGAGCATTGCTTGAAGAAGTTCGCTCAGTTGTCCAGCCTTATAGCGCACAAGCTCACTCATACAGCTGAAGCTATAGACAAATCACCGCAGTCTATACGTACACTGGAAAGGCCATTTAAGTGTCCGCACTGCACGTGCACCTTTGTCAGCAATCTGAATCGGAAGAAACATTTGCAAATCCATCAAGCTGAAACGCAGGGTGAAAATACTTTCAAGTGTCAGCATTGTCCAAAAACCTTTCAGAAAATGAAACCTTTTCTGATGCACGTACGCGGACATACGGCCGAACGACCGCATCAGTGCAACTACTGCACGAAAGTCTTTAAAGCCAGCCACGATCTGAAGAAACATCTGTCCAATCATTCGGGCAAATTTCCGTATGAATGTCCGCATTGTTCGAAAACCTTTGCACAGAGCGCGAACTTCAATTCACATCTGCGTGGCCATGCAGTCAAAAGACCCCATCAGTGTCCACATTGTACGCGCTCCTTTTTCAGAGAATACAGCTACAAATTGCATCTGTGCACCCATACGGGCGAGAAGCCGTAG
- Protein Sequence
- MNAIIDVSCVKIEPDQEPELQQEFYGVSKDANCAQLETELPFTEMDIGPIKIDPDGLREEPVVKEPSAQTEPPKTRKRKKAAAAATPSSTVVKGVHQCPHCPRHFERSDELDIHLLIHTDKLSYKCSHCPSSFSHKSIYTSHMYGHTGKFPHQCPDCPQGYMKFADLIKHQRTHIVKDQKKCPLCPRNCIHKGKSFLECPQCPRVFAKSFELQIHLQIHSNKLAYKCPYCSDSFAHKSNHTAHVREHTGEFKYKCPHCGRGYMKRDNFFDHKCPYNSLHQSKDGAMATTYANCTEMERLKLARQCEVLSKPKPVRPQVQRRVSPRVNKPTLELKTAESIKETRKEKQQQQSVKKDSPLVNMNSKHDSKLRSIKSEPAEEEEQSKPKQQTLNVNSRLAASKAVEQPAVRVNKKRTHTCNICSKEICNFKEQQLHAKYCTPANRQRAEKPPCECEHCLKKFAQLSSLIAHKLTHTAEAIDKSPQSIRTLERPFKCPHCTCTFVSNLNRKKHLQIHQAETQGENTFKCQHCPKTFQKMKPFLMHVRGHTAERPHQCNYCTKVFKASHDLKKHLSNHSGKFPYECPHCSKTFAQSANFNSHLRGHAVKRPHQCPHCTRSFFREYSYKLHLCTHTGEKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -