Dneo013381.1
Basic Information
- Insect
- Drosophila neotestacea
- Gene Symbol
- -
- Assembly
- GCA_035044365.1
- Location
- JAWNMD010000425.1:621994-624184[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.033 2.5 8.9 0.0 2 23 248 270 247 270 0.96 2 10 7.3 5.6e+02 1.5 0.3 6 23 279 296 279 296 0.89 3 10 0.0019 0.14 12.8 6.2 1 23 302 324 302 324 0.99 4 10 0.091 6.9 7.5 4.2 1 23 333 355 333 355 0.95 5 10 0.0057 0.43 11.3 1.4 3 23 365 388 363 388 0.91 6 10 0.00065 0.05 14.3 0.0 3 23 396 416 395 416 0.96 7 10 0.00084 0.064 13.9 1.3 2 23 425 447 424 447 0.97 8 10 2.5 1.9e+02 3.0 1.8 2 23 456 478 455 478 0.80 9 10 2.3e-07 1.8e-05 25.1 1.2 1 23 484 506 484 506 0.98 10 10 4.9e-06 0.00037 20.9 4.1 1 23 512 535 512 535 0.98
Sequence Information
- Coding Sequence
- ATGTGTTTTCTGTGTACACAATGTACGGATGACGCCATTGGCAATATCCAGTTTGGCTCCAATGAAGCCGCCTTGCTCGATATGAATGAAATCATAGAAAAACACTTTTGGCTCCAGaCTAAAGACGCCAGCGGACATGTGTGCAGTGCTTGCTGGGACcaattgtttgcatttcacAACTTCTATCTGAGTGTAGAGCAGGCACACAAGGAGATACTAGCAAATCACAGGGTTCTAGGAGTAGATGCCGAAGTAAATGTGGAGAAGGAGATTTCAGCAGAAGTACAGAAGGTGGAAGCAATTAAAGATGTTGTAAAGCAGGAGAATGTCCTTGGTGAGAGCGTCGCGGCTGCAGTAAAGCGTAGACGTGGACGCCCTCGCAAACAATTGCCACCTGAAGATGCAACAGGTATTAACAGTAGCGAGTTTAAAGCTGTACTGGAACAGATTAATCTGAATGAGATTAAGATTGAGTTTCCCGAGGCGGATTTGAGCATAGCCGATGTCCTGGAGGATCAGGAAGAGCATAATATGTCAGATTATCTACAACAAAGCGTCTGTGAAAGCGATGCTGATGAAATGGTTGACGTTCCAATACAGAAAAGGGCACggaagacaaagacaaagaagcGTCGCTGTGTAACGAAATCAAAAGTAGTTCGCAAGGTGAAAACCGAAGGAGTTCATAACATGACAAAGTCTAAAGAATTCAATGACTACATAAGAGATCACTATAAGGTCCAGTGTCCAGTTTGTAACGAACCGTTGGATGGATTTTCCGAACTACTTGTACATGCACGCAAAGATCACAATCAACGGGGGTACGCTGTGTGTTGCAATCGCAAGTTCTGGAAACGTGGCGTTCTCGTTGATCATCTGCGTCGTCATCAGGACCCGGACCTATTTAAATGCCATATTTGCCATCGCGTTATGGGCCATCGTCGCAGCTTGGAGCTGCATATGCGTATGCACGATATCAAACAACGTGGACGACTTTATCAATGCGAGCAGTGCTCCAAGAAATTTTACAGCTCCGTCGTCTGCGAGCGCCACAAACTGACACACATTCCCAAGGAGCAATGGCTTGTGAGCTGcaccaattgcaattgcaacaagaCCTTTCCCAATGAGTACCTTATGCAGCAACATGTGAAATTGGTGCACTTGAGAAAGTTTGATAAGATCTGCGACGTTTGTGGCAAATCAATACGCGGCCGCGAGGCATTGGTCCGTCACATGGAGGAACACGCTGGTGCACCACAAAAGGTTATCAAGTGTCATCTGTGTGAATCCACGCTGACCACGAAATATGGTCTAGCACGGCACATTAAAATGATGCACACCGCGGAGAATTTGCAGCCAATCCAGTGCGAATATTGCCTTAAAGTATCACCTAGCCTTCAGGCCCATCAGCATCACATTAAATACACCCACAATACGGCACGTACACATCAATGTCCAATGTGCGAGAAAGCTTTCAAGCGTCCCAATGAATTGCGCGAACACATGACAACTCATACTGGTGAGGTGTTGTACACCTGTCCGCACTGCCCAAAGACCTTTAACTCGAATGCAAATATGCACGCACATCGAAAGAAAATGCACTTTAAGGAATGGCAAGaatatcatcatcagcatcaggcACGACACCGCAACTCTAATACAATAATTTCTGTGAGTGTACGCAAGACAACAGAAGGTACATCTGCAGCAATAAACGAGGCGACAAACGAGGTAGTCGGCGGAGGATTGGAGTGTTGA
- Protein Sequence
- MCFLCTQCTDDAIGNIQFGSNEAALLDMNEIIEKHFWLQTKDASGHVCSACWDQLFAFHNFYLSVEQAHKEILANHRVLGVDAEVNVEKEISAEVQKVEAIKDVVKQENVLGESVAAAVKRRRGRPRKQLPPEDATGINSSEFKAVLEQINLNEIKIEFPEADLSIADVLEDQEEHNMSDYLQQSVCESDADEMVDVPIQKRARKTKTKKRRCVTKSKVVRKVKTEGVHNMTKSKEFNDYIRDHYKVQCPVCNEPLDGFSELLVHARKDHNQRGYAVCCNRKFWKRGVLVDHLRRHQDPDLFKCHICHRVMGHRRSLELHMRMHDIKQRGRLYQCEQCSKKFYSSVVCERHKLTHIPKEQWLVSCTNCNCNKTFPNEYLMQQHVKLVHLRKFDKICDVCGKSIRGREALVRHMEEHAGAPQKVIKCHLCESTLTTKYGLARHIKMMHTAENLQPIQCEYCLKVSPSLQAHQHHIKYTHNTARTHQCPMCEKAFKRPNELREHMTTHTGEVLYTCPHCPKTFNSNANMHAHRKKMHFKEWQEYHHQHQARHRNSNTIISVSVRKTTEGTSAAINEATNEVVGGGLEC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00608700;
- 90% Identity
- iTF_00608700;
- 80% Identity
- -