Basic Information

Insect: Drosophila neotestacea
Gene Symbol: su(Hw)
Assembly: GCA_035044365.1
Location: JAWNMD010000623.1:1773012-1778985[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0068 0.52 11.1 3.2 1 20 194 213 194 215 0.95

2 11 1.3e-06 9.8e-05 22.8 0.4 2 23 265 287 264 287 0.94

3 11 0.036 2.8 8.8 0.1 1 23 293 315 293 315 0.95

4 11 0.00025 0.019 15.6 0.6 1 21 322 342 322 343 0.94

5 11 3.7e-05 0.0028 18.2 0.2 2 23 355 377 354 377 0.96

6 11 6.7e-05 0.0051 17.4 6.7 1 23 383 405 383 405 0.99

7 11 0.00026 0.02 15.5 0.4 1 23 411 433 411 433 0.98

8 11 1.4e-05 0.0011 19.5 2.8 1 23 439 461 439 461 0.99

9 11 3.3e-06 0.00025 21.5 2.3 1 23 467 489 467 489 0.98

10 11 6.9e-05 0.0053 17.3 1.4 1 23 493 515 493 515 0.97

11 11 0.0061 0.47 11.2 0.0 1 20 523 542 523 547 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0068	0.52	11.1	3.2	1	20	194	213	194	215	0.95
2	11	1.3e-06	9.8e-05	22.8	0.4	2	23	265	287	264	287	0.94
3	11	0.036	2.8	8.8	0.1	1	23	293	315	293	315	0.95
4	11	0.00025	0.019	15.6	0.6	1	21	322	342	322	343	0.94
5	11	3.7e-05	0.0028	18.2	0.2	2	23	355	377	354	377	0.96
6	11	6.7e-05	0.0051	17.4	6.7	1	23	383	405	383	405	0.99
7	11	0.00026	0.02	15.5	0.4	1	23	411	433	411	433	0.98
8	11	1.4e-05	0.0011	19.5	2.8	1	23	439	461	439	461	0.99
9	11	3.3e-06	0.00025	21.5	2.3	1	23	467	489	467	489	0.98
10	11	6.9e-05	0.0053	17.3	1.4	1	23	493	515	493	515	0.97
11	11	0.0061	0.47	11.2	0.0	1	20	523	542	523	547	0.91

Sequence Information

Coding Sequence: ATGAACATGCTCAAACTTGTAACAGAAATCTCAAAGTCCGACTTAGAAATTAGTACTAACAAGACGTCAACCTCTTTCGTTTCCGGTAGCGCTGCTGAAACTGTGATCAAAATACTGGATGTCGCTAAGATCGTACCTCCCAAGAAAAAGCGTCCTAGTACTCGCATGAACGGCACAACGACTGTAAGCACTACGGGAAATGTTAAGATATTAAATGAGAAGCGCACTGCATCTGCTACCACTCCCGTTGAAACGGCAGAAATAAAGACATCGCCtagcaaaaagaagaaaatggaTCACTATGTCCAGCAGGCTATAAAGTGCGAGAATAGTAAAGCAGACAATATATCCAGCATAAACGTCGAGGATTTTGATACAATTGACTTTATACTCGCTGAGAATGATGACATCCATATGGGAGCAGCCAAGGCAAATgacgatgataatgatgagtTTGTTGTCTCTGGCGTTGAGGAAGATGTTGATGacgatgattatgatgatgatgattccTTGGGTGAATGCAGTCCCAACCGCACAAGTGGCACCAATGGCGAACTTAAGGAAATGCAAATTAAGCACACGTGCGGCAAGTGTTATCAGACATTCCGGCGCGTTCACAGCCTCAAAAATCACTTGGAATTCTGTCGTTATGACAGTGATTATTATCTGCGCAAGGCGGACATGCTTAAGAATCTGGAAAAGATCGAGGAGGAAGCTATGGTCATGGAGAAGACAAACACATGCTTCTGCTGCAGCGAGAGCTACGATACTTTACATCTTGGCCACATCAAGTGTCCAGATTGCCCAAAGTCTTTCAAGACACGGGCCAGCTATGAGCGTCACATCTTCATCACTCACTCCGAGCTCAACGATTATCCTTGCTTCATTTGTAATGCCAAACTACGTAGCTCTGCTCTGTTGACGCTGCATGAGGAGCAACATAAATTGCGTGGCAAACAGTTTGCCTGCAAGATCTGTGTCAAGGACTTTTCTAGCTCAATAAATTTGAAGCAGCATCGGAAGTATTCCTCTTGCTCGGCAAATGAGGATAATAGCATGAGATGCGAGCTGTGTGATCGGGTCTTCTATGGATTGAGCCAACTGCGAGCTCATCTCAAAAAGCCACATTTGAAGAAAACTGAATACATGTGCCACGTGTGCAAGAAGTGCTACAAAAGTCTCTTTTCGCTAACCATTCATTTACGTACTCACACTGGTGAAAAGCCCTTCGAATGCGATCTGTGTGACGAGAAGTTTTCAGCCTTGGCGGTCCTTAAAAAGCATCGTCGTTCTCATACTGGAGAGAAACCCTATACTTGCACATTGTGCAGTAAATCGTTTGCTGCCAAGGAGTTGCTTAATCACCACATGAAGCGACACACTGGCGAGCGTCCACACAAGTGCACCGAGTGCGGCAAGGGCTTCATACAGGCATTTGAGCTACGTAGGCATTCCAAGACGCATTTGCGTCCCTTTCCCTGCTCCTTGTGCACCCAAAAGTTTAAGACAGAAAAACAACTTGAGCGCCATGTTAAGGAGCATACGCGTCAGAAACGTTCTTGCTTCGCATGCTTGGAGTGCTCACTCGGCTTCCGCACCAGCGCACTGCTTAAGGAGCATATTGACGCCGGCGTTCATTCGCGAAATCATATACGTAATGTGCACGAATGCGATCCTGATAACATCTTTGGTACAGGACCACCATCTAAGGAAGTGAAAGTAATGGAGGGagaggatgaggaggaggaggaagttGCGCCAGCAAATACATCAGACGGTTTGCTCATTTCGAGCAAAACAGATGGTAATGGGGCTGTGGTGCGTGAGTTCCTAGTAGATGAGGGCGATGGAAATGCACAGACCACATCGCTAGAGAATGAAGTCCAcaccattttgtttttggactCAGAAAATGCTACCAAAACACCTGCTGGAAGACAGGTCAAGCCAGAGTCTAAGGATAAGCATCCAAAGGATGTTTCGCCAGTGGTTAGGAACAAACAACGCAAATCCCTAAGTGCCAGTTTGGCAGCTGCCATTGCTGATAATCTGGAGGAGTCATCAAGTGAATATGAGTTTACTGGCGAGGTGCTTACCGGAAAGGATCTAAAGCTCAAGGAGAATATTGCAAAGTTAATCGACATGCTGGTCGATCCACAAACACTGAAAAATTACGACTGGCCCAACAGCTCCATGGAGACTGTACTGTGCAAGGTCATCGAGAATTGTGGCCATGATCTGGCCAAGGGAGGAGAGAACTACTCCGAGTTGGATTACGGCAGTCGCATGCGAGAGTATTGCAAAATTCTGTTTACAGTTGTCATCAACAAAGATTCTATTAAGTCGATGCTAAATAACTTTTCAATTGACGACGTTATTGAGTATGTGCTGGGTGATGAGGATCAGGAACAGGAACTGGCAAAGCTACAAATTAAAGATTGGCTATCAAATTGTTGGTAA
Protein Sequence: MNMLKLVTEISKSDLEISTNKTSTSFVSGSAAETVIKILDVAKIVPPKKKRPSTRMNGTTTVSTTGNVKILNEKRTASATTPVETAEIKTSPSKKKKMDHYVQQAIKCENSKADNISSINVEDFDTIDFILAENDDIHMGAAKANDDDNDEFVVSGVEEDVDDDDYDDDDSLGECSPNRTSGTNGELKEMQIKHTCGKCYQTFRRVHSLKNHLEFCRYDSDYYLRKADMLKNLEKIEEEAMVMEKTNTCFCCSESYDTLHLGHIKCPDCPKSFKTRASYERHIFITHSELNDYPCFICNAKLRSSALLTLHEEQHKLRGKQFACKICVKDFSSSINLKQHRKYSSCSANEDNSMRCELCDRVFYGLSQLRAHLKKPHLKKTEYMCHVCKKCYKSLFSLTIHLRTHTGEKPFECDLCDEKFSALAVLKKHRRSHTGEKPYTCTLCSKSFAAKELLNHHMKRHTGERPHKCTECGKGFIQAFELRRHSKTHLRPFPCSLCTQKFKTEKQLERHVKEHTRQKRSCFACLECSLGFRTSALLKEHIDAGVHSRNHIRNVHECDPDNIFGTGPPSKEVKVMEGEDEEEEEVAPANTSDGLLISSKTDGNGAVVREFLVDEGDGNAQTTSLENEVHTILFLDSENATKTPAGRQVKPESKDKHPKDVSPVVRNKQRKSLSASLAAAIADNLEESSSEYEFTGEVLTGKDLKLKENIAKLIDMLVDPQTLKNYDWPNSSMETVLCKVIENCGHDLAKGGENYSELDYGSRMREYCKILFTVVINKDSIKSMLNNFSIDDVIEYVLGDEDQEQELAKLQIKDWLSNCW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -