Dneo006730.1
Basic Information
- Insect
- Drosophila neotestacea
- Gene Symbol
- -
- Assembly
- GCA_035044365.1
- Location
- JAWNMD010000157.1:3391760-3392854[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-19 4e-16 58.6 0.0 2 45 177 221 176 221 0.97 2 2 3 5.1e+03 -2.5 0.1 3 11 255 263 253 266 0.80
Sequence Information
- Coding Sequence
- ATGCCCGCCTGTCAGTCCAACTTGATTGGGAACGGCAACGGTGGCAATCAAAACAGTGGGGCGAATAACAGTACCGGCGTCGGCACTGCCGGCACCAACGatcaacggcaacagcagcagcagcaacatgatGCCCAGCAGCAAgcaacgcagcagcagcaacagcagcacttgcaacagctgcattatcaacagcagcagcaacaacaacagggcGCCGCAGCCGGTCAAGCGTACTCATCGCAAATTATTACCGTCAATAATCTGGTCAGCGGttatgcaacagcagcacagAACTTGTCACCAACGTCACCCAACGAGTCAAACATGGTGCAGTCCGTCTATAGTCAGGGTCCGACACCCACGCAATCGCCTGTGCATTCgggtgttggtggtggtggcggtggcagcAGTGCGGCCGGAAGTGCGGGCAGTGctggtggcggtggcggtggcaatAGCAGCAGTGGTGGTGGAGGCGGTGGTGGTCAAGTGCCTAAACGGAAGCGATCAGTTAACCCGCAAGGTGATGAGAATTTCATACGAGCCTTGGAGGCAGTACGTACAGGCGGCATTGGATTCTGCAAAGCTGCTCGCCTATATGGAGTCAACAATCGTACACTTTGGCTGGAGTATAAGAAGCGAGGTTATCCAGTCTCGAGGCCCAGCATTAAGGCGCGTGTGGTGAAGCAGGAACCAAATCTTTCACCATCACCAACACCATCCACAAATCCCGGCGATGACACGACCAACGAAACTTATGACCATCTAACCGCTGCCGTTGCCGCGGCCCAAACCGCTGCCCTCAACATGCAGATACCTCCACAGACCGAGACACCGACGCCATCGCTGATGTGTACGCCTCATCATGCAGGCGCAACAGCGGCCAGTACAGCCGGTGGCACGAATACCCATCCGATCGGTGTTATGAGCCTGTTTGACACACGGTATATGGATTCACCGACAATGTCCCGGCAGCGGTATATTGATGCGACGGGCGCCGGCACAGCAGCGTCAGCCACGGGAACGGGAACAATTAACGTGAATCCGGCCGCTGCAATGAATCTACAGAGTATTAACTTCAACTCAATATAG
- Protein Sequence
- MPACQSNLIGNGNGGNQNSGANNSTGVGTAGTNDQRQQQQQQHDAQQQATQQQQQQHLQQLHYQQQQQQQQGAAAGQAYSSQIITVNNLVSGYATAAQNLSPTSPNESNMVQSVYSQGPTPTQSPVHSGVGGGGGGSSAAGSAGSAGGGGGGNSSSGGGGGGGQVPKRKRSVNPQGDENFIRALEAVRTGGIGFCKAARLYGVNNRTLWLEYKKRGYPVSRPSIKARVVKQEPNLSPSPTPSTNPGDDTTNETYDHLTAAVAAAQTAALNMQIPPQTETPTPSLMCTPHHAGATAASTAGGTNTHPIGVMSLFDTRYMDSPTMSRQRYIDATGAGTAASATGTGTINVNPAAAMNLQSINFNSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -