Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.8 4.8e+03 -2.3 0.4 15 18 94 97 93 98 0.79

2 8 3 1.8e+04 -6.6 6.4 15 19 150 154 149 154 0.82

3 8 0.066 4e+02 1.2 0.4 4 10 185 191 184 191 0.95

4 8 3.2e-08 0.00019 21.4 15.5 1 18 199 215 199 216 0.98

5 8 0.22 1.3e+03 -0.5 2.3 5 10 241 246 241 246 0.93

6 8 1e-07 0.00062 19.7 18.2 1 19 252 271 252 271 0.97

7 8 0.61 3.7e+03 -1.9 0.9 5 10 295 300 295 300 0.92

8 8 2.3e-05 0.14 12.2 5.6 1 11 306 316 306 316 1.00

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.8	4.8e+03	-2.3	0.4	15	18	94	97	93	98	0.79
2	8	3	1.8e+04	-6.6	6.4	15	19	150	154	149	154	0.82
3	8	0.066	4e+02	1.2	0.4	4	10	185	191	184	191	0.95
4	8	3.2e-08	0.00019	21.4	15.5	1	18	199	215	199	216	0.98
5	8	0.22	1.3e+03	-0.5	2.3	5	10	241	246	241	246	0.93
6	8	1e-07	0.00062	19.7	18.2	1	19	252	271	252	271	0.97
7	8	0.61	3.7e+03	-1.9	0.9	5	10	295	300	295	300	0.92
8	8	2.3e-05	0.14	12.2	5.6	1	11	306	316	306	316	1.00

Coding Sequence: atggaaaagtttaATAAAGCGCAGGCAAAGAATTTGGCAGCCGCAAAGAAGCTTGTCGATGCATACGCATCCAGTTCAGAAGATGAGGGCGAATTGGATGAAAAACATATACTggATCTGCTCTACAAACATTATCAAAGCACGCCGCATAACTCGAGCAAACGCAACGACAATAATGCGAATCGTACGGCTACCTTTCTGGAGAACACCCTGCACTCGGGAGCGGCAACATGTCTCATTTGCATTGGCAGCATTCGGCGCGTGGAGCCGATTTGGTCATGCAAATCATGCTATTGCTTCTTCCATCTGAGGTGCATTCAGCGCTGGGCCAACGATAGCGTCATGCAAATGAAAGTCAATGCAGAGCAGCAGAATGGCAACCAGGGGCATTACAATCATCTTGGCGAGTTTGTGCCGCCCAAGCGTTCAAAATCGTTGCACTGGTGCTGCCCGCAGTGTCGCACGGATTACCAGCCGTCGGATCGACCCACACAATATGAATGCTTCTGCAGCAAGGAGGTGAATCCGGAGGCGCAACCATTTCTGGTGCCGCACTCCTGCGGCGAAATCTGTGGTAAACTGTTGCAGCCGAAATGTGGCCACGACTGCAAGCTACTCTGTCATCCCGGCCCATGTCCACCATGCGCTCAACTGGCGCACAGTTCCTGCCTATGTGGCAAGTCGGCGCCACGCTCTGTGCGCTGCATAGACAAAAATTGGCGGTGCCAGCAAACATGCCAATCTCTGTTGTCGTGTGGCAAGCACAAGTGCAACCAAAGATGCCACCCACCTGGCCAGTGTCCGCcctgcagcagcaagagcGCCCAGCACTGCGATTGCCGACGTGAGCAAAAAGTTGTGAACTGTGCGGAGCCCAAATGGAAgtgtaaaaatATTTGTGGCGCTCCTTTTGCGTGTGGTCTGCACAACTGCGACAAGGTGTGCCATGC
Protein Sequence: MEKFNKAQAKNLAAAKKLVDAYASSSEDEGELDEKHILDLLYKHYQSTPHNSSKRNDNNANRTATFLENTLHSGAATCLICIGSIRRVEPIWSCKSCYCFFHLRCIQRWANDSVMQMKVNAEQQNGNQGHYNHLGEFVPPKRSKSLHWCCPQCRTDYQPSDRPTQYECFCSKEVNPEAQPFLVPHSCGEICGKLLQPKCGHDCKLLCHPGPCPPCAQLAHSSCLCGKSAPRSVRCIDKNWRCQQTCQSLLSCGKHKCNQRCHPPGQCPPCSSKSAQHCDCRREQKVVNCAEPKWKCKNICGAPFACGLHNCDKVCH

Sequence clustering based on sequence similarity using MMseqs2