Dnen002973.1
Basic Information
- Insect
- Drosophila neonasuta
- Gene Symbol
- -
- Assembly
- GCA_005889595.1
- Location
- MRUE01012465.1:4549-8983[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 9.3 9.3e+02 1.0 7.0 2 23 173 195 172 195 0.96 2 18 0.16 16 6.6 0.1 1 23 202 227 202 227 0.91 3 18 0.017 1.7 9.6 1.8 2 23 238 259 238 259 0.93 4 18 5.4 5.4e+02 1.8 3.4 2 17 270 285 269 296 0.75 5 18 0.064 6.3 7.8 0.3 3 23 329 349 327 349 0.88 6 18 3.9e-05 0.0039 17.9 0.4 1 23 357 380 357 380 0.98 7 18 6.4e-05 0.0064 17.3 0.3 2 23 385 406 384 406 0.97 8 18 1.6 1.6e+02 3.4 0.1 1 20 414 433 414 435 0.89 9 18 0.00021 0.021 15.7 0.7 1 22 454 475 454 478 0.90 10 18 0.015 1.5 9.8 3.3 1 22 483 504 483 504 0.94 11 18 0.0028 0.28 12.1 0.8 1 23 523 548 523 548 0.96 12 18 0.041 4 8.4 2.0 2 23 564 586 563 586 0.93 13 18 0.025 2.5 9.1 0.7 3 23 593 614 592 614 0.93 14 18 0.0019 0.18 12.7 0.5 2 23 618 640 617 640 0.96 15 18 7.7e-05 0.0076 17.0 1.6 1 23 646 668 646 668 0.97 16 18 0.015 1.5 9.8 0.4 1 23 672 695 672 695 0.93 17 18 2.1e-05 0.0021 18.8 1.0 1 23 701 724 701 724 0.97 18 18 0.00023 0.023 15.5 0.2 1 23 728 756 728 756 0.87
Sequence Information
- Coding Sequence
- ATCAAGCCCAAATCGAAAGCCAGTCTAGAGAAACCAGTGGGTAAGCGAGGCAACTCCAAAGAATCTGATTCAGGGGAACAGGAGCAGATAGGCGCACTGCTACGTGACATATTCGGAGAGGAAAAGTTGGTGGCCAAAGAAAAACTAATTGAGATAGCAGAAGCTGTGCAGCAGTCGGAAAACATCGATAACGAGGAGCAGAAACAGTTGGAGGAAACGGTGCAAGAAGAGGAGCAGTCCCTCAAGGAACCGGACAACCCAGACGTTGACGAGCTGGAGTTTTTGCTGGAGGGTGACTCCTCGGATTTGGATGTGCCGCAATTGAAGACAGAGAAGCGCTCTTCACATGATACAACGCAATCCCaaaacgaaagcgaaagcgagaATGAAACTCACAAAGTTGAACCCTTCAACTTTGTCTTAATTAGAGAATCCGACGACGTTGGAGATCTGTATGAATACCTATCGACTGTAGTGAAGACCTGCTTTGAGACCTTGTCCTTTGACTGGGCCACCGTCTGTCAGCATTGCTCGCTAAAGTGCGGCAAATTTGAAACTCTTTTGAGTCATATGCTTAAGTGTCATCAGATGTCTGGGCAGCAGTTCAAGTGTCCCATTGGGGGCTGCGACAAGCAGCTGCGTGGACGCAAATTCCTGGCCATGCACTTGGTTCTGATGCATGCTCCAGTAGCAGAAATACCGATTTATGGCAGCTGTCCGGAGTGCAACCTGACTTTCTCGAATATATTGCAGTACAACAAACACTCTTGCGCCCATGTGATCAAGAAGCGTCGTGGCATTCGCTTGTATTGCGAAATGTGCGGCCTGGAGTTTCCCTCCTGGAAACGATTCAACTTTCacaatcaatttcatttggagCGACATCGACCACGCGCCTGCTTTGTGTGCGATTATGCGGACAATAACATCGATGAGCTCTTCCAACATTTGCATTACTCTCACGAACCGGAGGGTTCGCTCTTTTGCGATCTCTGTGATCGCACTTTCCGTGATGCTGCCATCTTTGCAGATCACAACAAATCCCATACGAATGTCACCACCAACACGTACACCTGCAGCGAGTGCAACGCTAGCTTTGATACTCGTGGTCGTCTCAATGGTCACAtgCGCATCACCCATGGCACAGTCATCAGTTGTGAGATGTGCAATCGCGAGTTTGCTACCGAAGCCAGTTACAACGTTCACATGAAGAAGCATCTGATCATCGAACGCGAGGTGCATGTGTGCAACAATTGCGGTTTACTCAGCGAGAGCAATGAGAAGATGACGGCTCATGTCGAGAATGAGGATTCGGTTTGCTTTGGTGTCGATGTCTATGTGGAACTCCTAAGAGATGCCTACATCTGTGAATATTGCTCTACTTACTATAAGACAAAGTCGGATTTGCGTGCTCATCGTGATTCGGGGCTGCACAAGGATGGTGTCTTCTGTTGTCAGCCGTGTGGCAAGGAGTTTAACGACATGAAATTGTATCGTCATCACATGCGCACCTATCAATTGCAGCGCGCAGATGTGGCCCATCGCAAGTTAGAAATTTGCCTGTACTTCATGTGCGACTATGAGGATTGCACTGAGTCGTACATCAGTTGGAATTCATTGTATACACACAAGCGCCGCACTCACGATCTGGCCGAGAAGCTGGATGCCAAGCCAAAGGCCGATGAATGGATCTGTCAATTCTGTCAGAAGCAGTGTCGCTCCAAAATGTCACTCTCGGTGCATGTGGCACGAAGTCACAACAACAACAACGTTGCTTGCAAGCTGTGCAAAGCTTCTTATAAAGATGACGAGGCGCTGAAGAAACATCATGCTTACTGGCACGAGCCCGTGGAGTGTTCGTTGTGCTTCAAAGTTGTAAAGAATCGCCGCAACTTTGACACACACATGAATGTAGTGCATTCGGATAACAAACGTTATGCTTGCAGTGTTTGCCAAAAGGGTTTCTATCACAAGAGCGAAATGGAAGCTCACAAGCGACTGCATAATCAATCGTATAGCTGCGAGAAATGCAGCTTCATCACAAGGAGTAAGAAATCATTGGCAGTTCATGTGCTGGGGCAGCATTACAGACGCTTTGCATTCGAGTGCAAGCAGTGTACTAAACGCTTTGGCCGTCAACAGGGCTTAACGAACCACATCTTGCGAGTGCATTCCACTAAATTCACATGTCGCGATTTCCTCGAAGGCGGCTGCAACAGAGCCTTCAACACATCGGCACAGTTGACGGTCCATGTGCGCAAGGTGCACAACAGCACCATTAGTGTGACTGAAGATGTTGACGACGAGGCCGTGGATCTGGAGCCAGAGGAGGAAGAGCAGCAGgaagagcaagagcagcaatCAATAAGAAAATCGAAGCGACAGAGGACGACAGCATCTTCTCCATTGGAAAAGAAACGTTGCGTTCGCCTCAGTAACGACACGCTGATCGAATTTATAAATGCAGAGTCGAAAGAGGATCAGAAGAACGCTACAGACTCGGAGATTTTCGAGGAGTTGCAGGAGAGGAAAGCCAACATCTTGCCGCCAAAGCGAAGGAAAAGACAATGTTAA
- Protein Sequence
- IKPKSKASLEKPVGKRGNSKESDSGEQEQIGALLRDIFGEEKLVAKEKLIEIAEAVQQSENIDNEEQKQLEETVQEEEQSLKEPDNPDVDELEFLLEGDSSDLDVPQLKTEKRSSHDTTQSQNESESENETHKVEPFNFVLIRESDDVGDLYEYLSTVVKTCFETLSFDWATVCQHCSLKCGKFETLLSHMLKCHQMSGQQFKCPIGGCDKQLRGRKFLAMHLVLMHAPVAEIPIYGSCPECNLTFSNILQYNKHSCAHVIKKRRGIRLYCEMCGLEFPSWKRFNFHNQFHLERHRPRACFVCDYADNNIDELFQHLHYSHEPEGSLFCDLCDRTFRDAAIFADHNKSHTNVTTNTYTCSECNASFDTRGRLNGHMRITHGTVISCEMCNREFATEASYNVHMKKHLIIEREVHVCNNCGLLSESNEKMTAHVENEDSVCFGVDVYVELLRDAYICEYCSTYYKTKSDLRAHRDSGLHKDGVFCCQPCGKEFNDMKLYRHHMRTYQLQRADVAHRKLEICLYFMCDYEDCTESYISWNSLYTHKRRTHDLAEKLDAKPKADEWICQFCQKQCRSKMSLSVHVARSHNNNNVACKLCKASYKDDEALKKHHAYWHEPVECSLCFKVVKNRRNFDTHMNVVHSDNKRYACSVCQKGFYHKSEMEAHKRLHNQSYSCEKCSFITRSKKSLAVHVLGQHYRRFAFECKQCTKRFGRQQGLTNHILRVHSTKFTCRDFLEGGCNRAFNTSAQLTVHVRKVHNSTISVTEDVDDEAVDLEPEEEEQQEEQEQQSIRKSKRQRTTASSPLEKKRCVRLSNDTLIEFINAESKEDQKNATDSEIFEELQERKANILPPKRRKRQC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00553861;
- 90% Identity
- iTF_00553861;
- 80% Identity
- -