Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 4.2e-12 1.4e-08 34.7 0.0 1 41 63 104 63 107 0.90

2 4 9.9e-15 3.3e-11 43.1 0.1 2 39 118 155 117 158 0.94

3 4 2.2e-18 7.4e-15 54.8 0.0 1 45 172 217 172 217 0.98

4 4 2.3e-20 7.6e-17 61.1 0.0 1 43 224 267 224 268 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	4.2e-12	1.4e-08	34.7	0.0	1	41	63	104	63	107	0.90
2	4	9.9e-15	3.3e-11	43.1	0.1	2	39	118	155	117	158	0.94
3	4	2.2e-18	7.4e-15	54.8	0.0	1	45	172	217	172	217	0.98
4	4	2.3e-20	7.6e-17	61.1	0.0	1	43	224	267	224	268	0.97

Coding Sequence: ATGATAATAACGCCAGAGATTGTCAATATGATGTCCACTGGGCATATGGACATGTACAACTCGGATACGAGCGAGGACTCAATGATGATCGCCAACGGTTCGCCGCACGATCAGAATGAGCCGCATTATACGAATTTGGATCAGCAGCACGGCGGCCTGGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTGCGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCATCAACGACATTATGGCAACGTGCTCATCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGCGGAACCAAATCGTGGAACGAGGATGCATTGCAGAATGCGCTGGAGGCGCTCCGATCGGGTCAGATATCGGCGAATAAGGCATCGAAAGCGTTTGGTATTCCCTCATCGACGCTCTACAAGATAGCGCGTCGGGAGGGCATACGGCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACACCCGAGGATTTGGAGCGTGCATTGGAGGCGATACGCGCCGGCAATACGTCCGTGCAAAAAGCCAGCGCCGAATTCGGCATACCCACAGGAACACTTTATGGACGCTGCAAGCGGGAGGGCATCGAACTATCGCGTTCGAATCCAACACCTTGGTCCGAGGATGCCATGAACGAGGCATTGAACTCAGTGCGCGTCGGCCAAATGTCCATCAATCAGGCGGCCATACATTATAACCTGCCCTACAGCTCGCTCTATGGGCGCTTCAAGCGCGGCAAATACGATGTCGTGGCCAATACCAGTGGCGTATCGCTGATGAACACATCGGGCAACACGACTGGCAGCATTGAGATTATTGAGCATAGTCAGGAGAATTCGttgcatatgttgcagcaacagttccCGTACAGTCCTTGA
Protein Sequence: MIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGQFNGPKAWTQDDMNCALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLMNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSP

Sequence clustering based on sequence similarity using MMseqs2