Dneo011516.1
Basic Information
- Insect
- Drosophila neocordata
- Gene Symbol
- ttk
- Assembly
- GCA_018903615.1
- Location
- JAEIGI010000001.1:12721568-12726206[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.8e-19 8e-16 57.6 0.0 2 45 465 509 464 509 0.97
Sequence Information
- Coding Sequence
- ATGTCTGTCCAGCAGTTTTGCCTACGCTGGAACAATCACCAGCCGAACTTTATATCGGTCTGCTCATCGTTGCTTCACAATGGCACATTGGTGGATGTGACTCTGGCTGCCGAGGGTCGACAATTGCAGGCTCATAAAATTGTGCTCTCCGCCTGCAGTTCATACTTTCAGGCCTTATTTACCGCAAATCCTTGCCAGCATCCCATTGTTATACTTAAGGATGTGCAGTACGATGATCTCAAGACAATGGTTGATTTCATGTACTATGGTGAAGTGAATGTATCACAGGAGCAGCTGCCCCACATTCTGAAAACAGCTGAAATGCTAAAGATTAAGGGCCTAGCTGAGATGCCTACTGATCCAGCCAATCTCACCAAATCGGACAGCAAGTCATTACGCAAATCCTCGAATAACGGCTCCGGCGAGCGCACGAACTCAGATGAGCAACAGCATCAACAGCAACAGCAGCAACACAACAGCTCTCTGGATGCCACAGCGGCGAGTGCAGCTGCTGGTGCGGGTGGTCTAAGTTTGGCCCAAATGAGCCAAATGTCGTTTGGTGCAGGTGGCAATGCGGCCGCAACCATCGGCAGCCTAACTGGTCACTCCCTTCACGCGGCAAAGCTGCTTAAGGAGTCGGCTAGCAGCGAACTAGAACCCCAGCCTCAGGATTCGGATCTGGATGATGGCCATGGACATATACATATGCAAATTAAGCCTGAAGTGGATATCGGAGGAGTTAATCAATCAATGCCCTTGGATATTTCTGGAGCCACCACACCATCAGAGCACGATGCACCCAATTCGCAATCATCGCATTCTGGTCTGCAATGGACAGTTGTCGACTCAAACTATCCGCGCTTTTCCCTGCCCGCCTGCCAGTCCAACTTGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGCTTCTGGTCAGACGTACTCACCGCAAATAATAACCGTTAATAATCTAGTCGGCGGTTATGCGACGGCCGCCCAAAATCTATCGCCAACATCGCCCAACGAATCCAATATGGTGCAATCGGTCTATAGCCAAGGTCCCACGCCCACCCAGTCCCCAGTGCATTCTGGTGTTGGGGGAGCAAGTGCTGCAGGCAATAATGGAGCTGCCAGTGGCGGCAGCGGAGGCGGTGGTGCTGCTGGCCAAGTGGTTAAGCGCAAGCGTTCAGTGAATCCCCAAGGCGATGAGAATTTCATACGAGCTTTGGAGGCGGTGCGCACTGGAGGCATTGGTTTTTGCAAGGCGGCGCGTCTTTATGGTGTGAACAATCGTACACTTTGGTTGGAATACAAGAAGCGCGGCTATCCGGTTTCCAGGCCTAGCATTAAAGCCCGTGTCGTTAAGCAGGAACCAAATCTATCTCCCTCACCCACACCATCAACGAATCCTGGCGATGACAATACCAACGAGACGCTTAATATGCAAATGCCGCCTCAAGCAGAAACGCCGACGCCTTCGCTTATGTGTACGCCGCATCATGCCAGTTTGGCCAGTAGTGGGGGCTCTCTACCTGGTAGCGCTGGTGGCGGCAATACCCATCCGGCCATTGGTGTGATGAGCCTTTTTGATGCCCGCTACATGGACTCTCCGGGCAGTGTGCATACAATGACGCGGCAGCGGTATATCGATGCGAGCGGAGGTGGAGCCGGGGCCGCTGGCACGGGTGCAGGCACCATTAATGTGAATCCGGCTGCTGCAATGAATCTACAGAGTATTAACTTTAACTCGATATAG
- Protein Sequence
- MSVQQFCLRWNNHQPNFISVCSSLLHNGTLVDVTLAAEGRQLQAHKIVLSACSSYFQALFTANPCQHPIVILKDVQYDDLKTMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEMPTDPANLTKSDSKSLRKSSNNGSGERTNSDEQQHQQQQQQHNSSLDATAASAAAGAGGLSLAQMSQMSFGAGGNAAATIGSLTGHSLHAAKLLKESASSELEPQPQDSDLDDGHGHIHMQIKPEVDIGGVNQSMPLDISGATTPSEHDAPNSQSSHSGLQWTVVDSNYPRFSLPACQSNLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGASGQTYSPQIITVNNLVGGYATAAQNLSPTSPNESNMVQSVYSQGPTPTQSPVHSGVGGASAAGNNGAASGGSGGGGAAGQVVKRKRSVNPQGDENFIRALEAVRTGGIGFCKAARLYGVNNRTLWLEYKKRGYPVSRPSIKARVVKQEPNLSPSPTPSTNPGDDNTNETLNMQMPPQAETPTPSLMCTPHHASLASSGGSLPGSAGGGNTHPAIGVMSLFDARYMDSPGSVHTMTRQRYIDASGGGAGAAGTGAGTINVNPAAAMNLQSINFNSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00604171;
- 90% Identity
- iTF_00577855;
- 80% Identity
- iTF_00555920;