Dneo009625.1
Basic Information
- Insect
- Drosophila neocordata
- Gene Symbol
- -
- Assembly
- GCA_018903615.1
- Location
- JAEIGI010000007.1:2066664-2068003[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.8e-13 3.7e-10 39.4 0.0 3 41 259 297 257 301 0.92 2 3 0.012 25 4.8 0.0 27 38 330 341 325 344 0.89 3 3 3e-15 6.5e-12 45.1 0.0 3 44 368 409 366 410 0.92
Sequence Information
- Coding Sequence
- ATGAACAAACTAAAGTGGATGGGTCATTCGGCCACCATAATGGGCATTCAGTGTTCGCTGCTAAATGACGACAAATCGTGTGAAGTTATTTTGGTAACCCAAGATGGGGCAAGTGAGCGCGCTCATCTTTATGTGCTCTGTACATGCAGCGATTTGATGTGGAATCTGCTGAAGGATTTACCACCAGGCCAGCAGGCAACGATTATTCTACCCGACATCCGAGGCGACCTGTTGGAAAGTATTCTCTCGTTTATATACGTGGGCGAAACAAGCCTGCCCTCGGATTCGCTAACTGAATTCATGGAGGCCTTGAATGTACTTGGCATTAAGGCGCCGATAAGGTTCAAGTGCATTCCCAATTGCGACCTGCAAATCGAGAATTCTGAATTGTTTGATATAGAATATGAGATGGGAGTACAAGAACCCGATGATGAGGATGACGATGATGTGGGAAATAAGTCCAAAAACAAAGCAGAGGAAGAAGAAATGGTAATGTTTGAAGAAGAATATGTGGCAACCGATCCTTTGACCAGCTCAGCAGTTTGCTCTGATGCTGAAATAGATGAATATATACCCGAAAATGATTGTGATGACGACGAAGACGATGGCGATGTGTTTGATGTGATGGAGATGGAAATGGAAACGGAAATGGAAACAAAATCGAAGCCCAAAACAAAACCACGTCGCGAGGCCAATCCAAAAGCGAAACGCTCAGCCGGCAAGCTACCCCAAAAAGAAAGTGGTTCGCATATTGAGGGTAAAGATGGTATCACTGATGCACTGGAACTAGCCGCTGATGCCGTTATCCGCCTGAAGCTTAGCCTACAAAAGGCTGCTGATCGCTATGACATATCAAAAACAGTTTTGTGGCGTCGCGTGCGCAATTGTCCCGAGTACATACGCAGTAATCGCAAGAATCCCATGCTATCAGAGGCGCACAAACGCCTTAAGAAGGGTCATTCTCTTAAAAGTATTTGCAATGATTTAAATATACCTATGTCTACTCTCCACCGCCACAAGATGCGTCTAGCAGCCGAGGGGCAGTTGCCCAAATATGGGGATGACCGTCGGCGTGATACCACACCCAAAGATGAATTAAAAGACAAGCTTCGAAAGGCGATGCACGCTTGCACTTACGATGGTATGACAGTTAATCATGCGGCCAATCTATTCGAGATACCCAAGAGTACGCTTTGGCGTCACTTGCAACGCATTCCGACTTCCAAAAAGGGAAAAGGAAGAAAAGCCCAAACGCGATACATAAAAGAAGAATAA
- Protein Sequence
- MNKLKWMGHSATIMGIQCSLLNDDKSCEVILVTQDGASERAHLYVLCTCSDLMWNLLKDLPPGQQATIILPDIRGDLLESILSFIYVGETSLPSDSLTEFMEALNVLGIKAPIRFKCIPNCDLQIENSELFDIEYEMGVQEPDDEDDDDVGNKSKNKAEEEEMVMFEEEYVATDPLTSSAVCSDAEIDEYIPENDCDDDEDDGDVFDVMEMEMETEMETKSKPKTKPRREANPKAKRSAGKLPQKESGSHIEGKDGITDALELAADAVIRLKLSLQKAADRYDISKTVLWRRVRNCPEYIRSNRKNPMLSEAHKRLKKGHSLKSICNDLNIPMSTLHRHKMRLAAEGQLPKYGDDRRRDTTPKDELKDKLRKAMHACTYDGMTVNHAANLFEIPKSTLWRHLQRIPTSKKGKGRKAQTRYIKEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00501159;
- 90% Identity
- iTF_00555957;
- 80% Identity
- iTF_00555957;