Dneo003148.1
Basic Information
- Insect
- Drosophila neocordata
- Gene Symbol
- retn_1
- Assembly
- GCA_018903615.1
- Location
- JAEIGI010000017.1:675926-684558[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.8e-26 5.6e-23 81.2 0.0 2 89 20 105 19 105 0.96
Sequence Information
- Coding Sequence
- ATGTTGATTTCCGAGGATCAAATCCAGGAGCTCTATGAAATCAATGATGATCCCAAGCGAAAAGAGTTTCTTGATGATTTGTTCTCGTTTATGCAAAAGCGCGGCACACCCATTAATCGATTGCCGATAATGGCCAAATCGGTATTGGATCTATATGAGCTATACAATCTGGTGATAGCACGAGGCGGCTTGGTCGACGTCATCAATAAGAAGTTATGGCAAGAGATCATCAAGGGACTTCATCTGCCATCGAGCATCACCAGTGCGGCATTCACCCTGCGTACCCAATACATGAAATATCTTTACCCATACGAGTGCGAGAAAAAGAATCTGAGCACTCCAGCTGAACTTCAGGCAGCCATTGATGGAAATCGTCGGGAAGGACGTCGCTCCAGCTATGGTCAATATGAGGCCATGCACAATCAGATGCCATTGACGCCTATTGCACGTCCCCCCGGTATGCCCGGCGGCATGCAACAAATGTCGCCTTTGGCCTTAGTCACACATGCCGCGGCAGCCAACAGTCAGCAGGCTCAGGCTGCAGCCGCTGCTGCTGTGGCTCATCGTAGGCTGATGAGTGCTCCTGGTTTCGGTCAAATGCCAAATCTGGTTACCCAAGAGATAGAGAATCGTATGATGGAATATCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCCCAAAGTCCGGAAATGAGCACCCGTGAGGCACTTAGTGCACAGGTCGCCCTGTGGCATATGTATCACAACAATAGCAGTTCGCCGGGTTCCGCCCACAATTCCCCACAGCAAGGCGAAGCCCTCAATCTTTCCGACTCACCTCCCAATCTGGCTAACATCAAGCGGGAACGCGAACGCGAACCGACGCCTGAAAATGTGGACCAAGAGGAGACGCCACATCAGCCACCACCTGCCAAGCGTGTTGGCAGTGGCCTTATGCCACCCGGTTTTCCAGCTAATTTCTATCTAAATCCACACAATATGGCCGCAGTGGCCGCTGCAGCAGGTTTCCACCATCAAGCTAATAGTGGTGCACACCATCAGCATCATCATGAACATCCAGATGCAGTGTCAGAAGGTGAGCCGGAAGATGAGTATTGCCAAGCTGAGCATAATACAACAGGCAATTCCTCATCTATGCACGATGAGAATGAGCCACAGCAGTTAAATGGGCACCACCACCATCAGAATCATTTGGACAAATCGGATGACTCGGCCATTGAGAATTCGCCGAGTACATCGACTACCACTGCATCGGTGGGTCATCGTCACAGTTCACCTGTATCCACCAAGAAAAAGAATTCCACCAAATGTCAGTCTACAGCTAAGGAATTGCCAGCCAGCGAGAAAAGTGCAGACAACAGTGGAAAACTGAATGCTCTAGAAACCTTAAGTCTGCTATCCAGTATGCAATTCCAAGTGGCACGTAATGGTACTAGTGAGAATGGCGAACAAGAGCTAATGGTTAACTTGGAGCTAAATGGCATCAAGTATTCGGGTGTTCTAGTAGCCAATCCCAATACTCCAATTGAAAAAGTAGATTCCAGTAGAGCTTCAACTACATGCAAAGATGAAAACGATGAGCAACCGCATGCTGATGAACAGATGAATGAGGAAGAAAATGATGAAGGGAATAGAGAAGAGGAAGAGGATGAAGAAGATCAGGAGGCGGTTGAACGTTCGCCTGTCAAAGATAACGCCCAAGCCCATAAAGAGGTGACACATGACCAAGCAATGGATGCCACTGCTGCCATTGTGAATGGCGGTAACAGTAATGTGGGCGTATCCGTAGGCGTAGGAGTATCCTTGCTTAAGGATGCTGTGGTCAGTTCATAG
- Protein Sequence
- MLISEDQIQELYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPIARPPGMPGGMQQMSPLALVTHAAAANSQQAQAAAAAAVAHRRLMSAPGFGQMPNLVTQEIENRMMEYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQSPEMSTREALSAQVALWHMYHNNSSSPGSAHNSPQQGEALNLSDSPPNLANIKREREREPTPENVDQEETPHQPPPAKRVGSGLMPPGFPANFYLNPHNMAAVAAAAGFHHQANSGAHHQHHHEHPDAVSEGEPEDEYCQAEHNTTGNSSSMHDENEPQQLNGHHHHQNHLDKSDDSAIENSPSTSTTTASVGHRHSSPVSTKKKNSTKCQSTAKELPASEKSADNSGKLNALETLSLLSSMQFQVARNGTSENGEQELMVNLELNGIKYSGVLVANPNTPIEKVDSSRASTTCKDENDEQPHADEQMNEEENDEGNREEEEDEEDQEAVERSPVKDNAQAHKEVTHDQAMDATAAIVNGGNSNVGVSVGVGVSLLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00554860; iTF_00603862; iTF_00618131; iTF_00611845; iTF_00590743; iTF_00577556;
- 90% Identity
- iTF_00577556;
- 80% Identity
- -