Dneb013536.1
Basic Information
- Insect
- Drosophila nebulosa
- Gene Symbol
- -
- Assembly
- GCA_018150735.1
- Location
- JAECWO010000004.1:1822407-1828239[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.011 0.76 10.4 0.3 1 23 1330 1353 1330 1353 0.95 2 13 7.5 5.4e+02 1.4 0.2 1 23 1509 1531 1509 1531 0.91 3 13 0.00017 0.012 16.0 2.7 2 23 1534 1555 1534 1555 0.97 4 13 0.00011 0.0078 16.6 0.9 3 23 1563 1583 1561 1583 0.98 5 13 5.4e-07 3.9e-05 23.9 4.1 2 23 1590 1611 1589 1611 0.97 6 13 5.1 3.7e+02 1.9 0.4 5 23 1624 1642 1622 1642 0.96 7 13 1.3 92 3.8 5.4 3 23 1649 1670 1647 1670 0.93 8 13 0.13 9.8 6.9 0.2 2 23 1681 1701 1680 1701 0.96 9 13 5.1e-05 0.0037 17.6 0.4 1 19 1707 1725 1707 1729 0.95 10 13 3.3e-05 0.0024 18.3 0.4 1 23 1737 1759 1737 1759 0.98 11 13 9.6e-05 0.007 16.8 7.6 1 23 1765 1787 1765 1788 0.96 12 13 0.00019 0.014 15.9 5.9 1 23 1793 1815 1793 1815 0.98 13 13 0.027 1.9 9.1 8.2 1 23 1821 1843 1821 1844 0.95
Sequence Information
- Coding Sequence
- ATGGTCGACAGTGTCCAGTGCCCCGTGTGCACTTTGTATCTGCATGCGGGCATGAATCTGTCGGATCATTTGGAAACACATCCCAAGGAACAGGTCATTAAGGCCTTGGTGCAAATGACAATCGTTGGCAATGGGAATGGCAATGGCATGGGTAGTGCTCTGGCGGCGGCTATGCTTGCCACATCCGTTAATGATAATGCACTGGCCTCAGTCAGTCCACCATCCGCCGCATCCGCATCACCAATTGTTGATGTCAAACCATCTGCAAAAACGTTGGCTACTGCAAAAGCATCCGCGTCCTCGTCGTTGTCGTCTTCGTCGTCGCCATCGACGTCTCAGCCGCCGCAGCCACCGCCTCCGCTATCGTCCTCCGCCAATGGCGGCGGAGGCGGCAGCGTCTCCTCTAACAAATTAAATAATCCACCGATTAAGGCAACACTGAAAAGCGCTCCGCCCATGCCCTCGCCCACGCCCTCGACACCTACGACTGAGGCACCAGCCAAACCATCTGCACCCACCACAATATATCAGCCACCGTTGGCCCCCACAGAGTATGGCTATGATCAGCAACACCAACAACAACAACAACAACATGGTTTTCCGCGTGGAGCCACTGCCACATTGGTTATCCCACAAGTGCCGCAGCAACATTTCCTGGCCAGCCAGCAACAGCAGACTCTGTTTGCCCATCAGACGCAGACGCAGCCTGGACTTAAATATACTACCTATGGGAATACCTCGCTGCCACCGCCACCGCCATTGCAGATCTTCACTCAGCAACAGCAAGGGGCAACGCAGTCACATCAGAAACCCCCACCCGCCTATGGAGCCGCCATCAGTCAAATTCGATCTCAGCACAACCAAAACAAGCAGCAGCAGCAACAACAGCAGCAGCACCACCACCACCACCACCTAAATATGCACCACAATTTAACCCTGGCACCACCGAACACCACTGGAACTGGCAAACAGCAGCAGACTAGCAAAGTTTTGACAGAAGTATTTCTGAATCCCCCACCACCTCCACCGCCGCCATTGCCAGCCACGGGACAGGCACTGCATCATCACCAATCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACATCAACTACTGCTGGCCACGAGTTGCACCTCCTCCTCGTCATCGTCGTCGGTTCGCGGAAGTCGCCAAACAAATTCACCCTTTGGAGCACTTCTCAATGCAGCTGCTGCAGTTGCCTGTGCCGCCAATTCGTCATCGTCGAACTCCTCTGTGTTGCGTTATGCGGAATCCCCAGTTGCCCATTATCTGGAACGGGAAAACGGAGATTTCATTGTCCAGGAGACACCCAAGCACATTGTGGAGTGTGTGGAGAAGGAAGATGGTGAATTCTCAGTGATTGAACGTATATATCAATCGCCACCAAGTGTCCTGCACATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGCGAGGAGAATAGTCGTAGTCGTAATCCAAGCAAGTCCACAACGAAAAAGTCACGCAAATGCAAACCCAAGCGGTCCGCAAAGCAGCAGAAGCGAATACTAGGTTCGGAGGATGAGTTCATGAGCTTAAGCAGCGGGGCAGAGAGCGACTCGGAGAAGCGGGAGCAGAAAGTGGAAGTGACACAACCGCCCTTGTGCACGGCCCCATCCACGAGCAGTGCGGCAGCAGTTGCAGCTGTAGGAGTCAGTACAACCGCTGCTGCTGGTGCTGCTGGCAACTCCATCTCAGGGGATGGCAATTCCAGTTCCACGTCAATAACCACCACCACCACCAACACCACCACAACCAAATCCAAAAAGAATCGCATCACTGTGCTCAGCGATGTGCCGCTCAATATGAACGAGTATCTCGATCTAATGGGCAACATTGTGGCCTCCAGTCGCATTGGGCAAGCTCGTCCCTTTGCCGCCGTAGCTCCCATTCCCCTGGTGAAAGTGGAAAAGGAGGAACCCTTGGATGACTATGACAACGAGAGTGTGCCGGAAACAACTCCCGTGGAGCAGAAGCCCAGTCTGGGTACCACCAGCGTAATCCGTATGGCCAGCGCCACCAGCAGCAGCAGCCTTACAACTGCCGAAGATCTCACCCAGCCACCGCTTATGAAGATTGAGGTGGAGCCGACCACATTGCTAGCTCCCCGCTTCTCGGCCCCGGCACCGGCACCGACCGCCACGCAGCGTGGTCCCAAGAAGTTGGTGATCAAACCAAAGGCCTCCTCGGCCACGACAACAACGAAAAAGACTGACACCCTCACCACCCCCAACCTCCTGCATCCGCAACAATCATCATCATCATCATCTCTGTCATCTTCCAACCAAATCATATCAAACGGAAATGTCACTGCAGCTTCCATCTCCGCTGAGATGGTGCAAATCAAGTGCGAGAAGGTGGAGCCGCCGTCAACGAGTAGCAGCAGCATATTGGAGAATCATCTGACCAAGCGGAAGCACTCGACGGTAAACGATGATGATGCCCGTGTGCTGCTCGAGTTTGCCAACTCCAAGCAGTCGCCGCCGTTGACTGGAGGCGCCACCTCCAATACGACATTTGTGGTAAATGCCGCCGCCTCCAGTTTCCCCTCGGCTGGGTCCGTCTTCGCCAGCAGCAGCACCAGCAGTACGGCACCTAACCAGATTGCTTCCAAACCGGGCGATGAATACATTCTGCCCGACAACAATCTGGAGGTGGATGAAATTGTGATATCCTCATCGTCTTCCTATGCCGCCTCAAGTGCTTCACAGCTGCAGAACCAAGCCCAGGTGCAGGCCCAGACGCAGGCATCAACCTCGATACATGACTTTAACTTCCTGTATCATCAGAACACCACACAGACGACGACAGCGGCCACCTCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCCACCAATGCTGCCACTTTGGCCTCTTCTTCAAGCAATTCCTCGGCGTTGGATCATGATTCAATGAATGCCACTTTCCGTGTTACCAAAACACAATCCTCGCACTCCCACTCCCATTCGTGGTACCATCAGGTGCAGCAGCAGCCCCAAACATCGACAGCGGCAACGGCAGGCAGTGGCGCAGGGGCATCCGCATCCGATTTGGCCCAACCCACCAATTTCAATGCCGCCTTGGCTGCCGTCGAATGCTGCAGCGTGGCAGTGGATGGAGGAGATGTCAAGGCATACCTTGATCTCGATGCCTGTAAGCGGGAACAGTTGAGCAACAGCAGCAATTTGCCATCGGTTTCAGCATCCACCTCGTCCTCGTCGTTTGCCGGTGCCGGCACAGAAAGCAGCCTGGTTGGAGGTCTCAATATACGCACCGATGAGAAAATGCCCGCCAAGGGTGAAATCTCTGAGCAGGAGAGCAACTGTGACATTGAGAACTCCTGGAGTCAGTCGATGTATGGCGACATATCACAGCGCTACTTTAGAAATCAATTCTCCGGCGGTTACAATAGCGACTGGCGACAGGACTACTATCCAGCTCAGGATCTCAGCGCCCAGCAGAGGGAACACAAGCGCTTTGATTTTAATGCTGTCGACGAGGAGGCATCATCCATATCGAGGAAGAGTTCACCCATACCCACCGCTTCGACCTCATCGTCAATATCCTCGGCTTTGCTGGCTGGTCCACCAATAGCCTCCACCTCCAGGGCGGCAGCTGAGGCAGCGGCCGAAGCGGCAGCAGCAGTCGCCGCTTTGGCCCAACGCAAACCGCCGCCGCGTCGCAAAATCTACAAGTGTCCCCACTGCGAGGCAATTTTCGAGAAGCTCAAGGAGCGTAATGCCCACATGATTGGCGAGCACAATTATGTGCGTCAGAATCGCCGCTTGATCTGCACCCAGCCGCTGGTGAGCTCGTCGTCGTCGAGCATGTTGCCGCCACAGGCCCAGCATCAGCACCAACCAATGTTAATCCAGCCAGTAAATGGAATCTTGCAAGAAGACTCAAAAGATGGCATTGTTAAGATCAAGCAGGAGCAGTGTCAGGACAAGCATGAGGCCGAACAGCAGATGCTGGCCCACGCTGAACTGGCCGACATGAAGGATGCCGAACTGTTGGGCCATGCCGCTGGGCTCGATGGCGACATAAAGCCACCAGGCGTCGGTGGCGATCTGGATGAGAAGCTCACCATACCTCTGGCAATGACGACGCCGGCTGCCAAATTGGCTGCCCTCTACCGCATGCTGATGGCCTACAACGAATCAAAGCTCGGCCAGGAGCGCAACAACATTAGCGAACTGGAACAGAAGGCCATGGAGAAATCCATTTTTCTGTGCTATGTCTGTCGCACCGATTTCCCCTCCGTCAAACTGTACGATGCCCATCTGACAGAGCATCCTGCCGAATGTTTCACATGTGGAAAGAAATTCTATCGCTGGAAGAACTTTTCGCTGCATCTGAAGCGTCACTTGGGCTGGAAGGAATTTGGCTGTTGTGTGTGCGACAAGAAGTTTGTGGTCCGTAGTGCCCTGGTGGAGCACATGCGAATGCATACTGGCCAGACGCCGCTCAAGTGCAAGATTTGCGGCAAGAAATTCAAGCGTTACTCCAATTTAACGCAGCATCGCAAGCGACACACGAAAATGATGGTACGCAAGAAGGAATATGTGTGCCATTGCGGTGAGGTGTTGCCCTCAAAGGCACGATTCCTTTGGCACAAGGAGACCCACGATTTGAAACCGAAATGTTGTCCCTACTGTTGCGATCGATTCGTACATGCCAATTCCCTGCGTCGCCACATACGTCTGGCCCACTCGGACAAATTCGACTATGCCGAGCCCATGGAGTGCCCCATGTGCAAACAGATTTTTGCCAAGACCTCCATTAAGGCTCACATGGCCACACATTCAACAGATCCGCAATACGATTGCGCCATCTGCAACAAGAGCTTCTCAACCAAATGGAATTTGAAAATCCATTCGTGGGTGCACGCCAATCGCACTGCCAAGCCCTTCAAGTGCGAGTATTGCCCCAAGGCGTTTGTCCGTGAACTGGACTTTAAGAATCACATCAATGCCCACAAGCAGATCAAACCGTATACCTGCGAGTATTGCGGCTGCAAGTTCATACGCAAATACAACTATATGCGGCATCGGCGTGAACATCATGGCAACAAGATGTTCACATGCGATCAGTGCGACAAGTCCTTCCATCGACACTACTATCTGATCGAGCATCGACGCATTCATACGGGAGAACGACCCTTCCATTGCACCATTTGCGGCAAGAGCTCCACCACGAAAACCAATCACAACAAGCATCTGAAAATTCATCACTCGCGCGATCCATTCACCGTGGAGGTCTAA
- Protein Sequence
- MVDSVQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTIVGNGNGNGMGSALAAAMLATSVNDNALASVSPPSAASASPIVDVKPSAKTLATAKASASSSLSSSSSPSTSQPPQPPPPLSSSANGGGGGSVSSNKLNNPPIKATLKSAPPMPSPTPSTPTTEAPAKPSAPTTIYQPPLAPTEYGYDQQHQQQQQQHGFPRGATATLVIPQVPQQHFLASQQQQTLFAHQTQTQPGLKYTTYGNTSLPPPPPLQIFTQQQQGATQSHQKPPPAYGAAISQIRSQHNQNKQQQQQQQQHHHHHHLNMHHNLTLAPPNTTGTGKQQQTSKVLTEVFLNPPPPPPPPLPATGQALHHHQSXXXXXXXXXXXXXXXXXXPHQLLLATSCTSSSSSSSVRGSRQTNSPFGALLNAAAAVACAANSSSSNSSVLRYAESPVAHYLERENGDFIVQETPKHIVECVEKEDGEFSVIERIYQSPPSVLHIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREENSRSRNPSKSTTKKSRKCKPKRSAKQQKRILGSEDEFMSLSSGAESDSEKREQKVEVTQPPLCTAPSTSSAAAVAAVGVSTTAAAGAAGNSISGDGNSSSTSITTTTTNTTTTKSKKNRITVLSDVPLNMNEYLDLMGNIVASSRIGQARPFAAVAPIPLVKVEKEEPLDDYDNESVPETTPVEQKPSLGTTSVIRMASATSSSSLTTAEDLTQPPLMKIEVEPTTLLAPRFSAPAPAPTATQRGPKKLVIKPKASSATTTTKKTDTLTTPNLLHPQQSSSSSSLSSSNQIISNGNVTAASISAEMVQIKCEKVEPPSTSSSSILENHLTKRKHSTVNDDDARVLLEFANSKQSPPLTGGATSNTTFVVNAAASSFPSAGSVFASSSTSSTAPNQIASKPGDEYILPDNNLEVDEIVISSSSSYAASSASQLQNQAQVQAQTQASTSIHDFNFLYHQNTTQTTTAATSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATNAATLASSSSNSSALDHDSMNATFRVTKTQSSHSHSHSWYHQVQQQPQTSTAATAGSGAGASASDLAQPTNFNAALAAVECCSVAVDGGDVKAYLDLDACKREQLSNSSNLPSVSASTSSSSFAGAGTESSLVGGLNIRTDEKMPAKGEISEQESNCDIENSWSQSMYGDISQRYFRNQFSGGYNSDWRQDYYPAQDLSAQQREHKRFDFNAVDEEASSISRKSSPIPTASTSSSISSALLAGPPIASTSRAAAEAAAEAAAAVAALAQRKPPPRRKIYKCPHCEAIFEKLKERNAHMIGEHNYVRQNRRLICTQPLVSSSSSSMLPPQAQHQHQPMLIQPVNGILQEDSKDGIVKIKQEQCQDKHEAEQQMLAHAELADMKDAELLGHAAGLDGDIKPPGVGGDLDEKLTIPLAMTTPAAKLAALYRMLMAYNESKLGQERNNISELEQKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCCVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFKRYSNLTQHRKRHTKMMVRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTDPQYDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHINAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKMFTCDQCDKSFHRHYYLIEHRRIHTGERPFHCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- iTF_00604391;
- 80% Identity
- -