Basic Information

Insect: Drosophila nebulosa
Gene Symbol: -
Assembly: GCA_018150735.1
Location: JAECWO010000031.1:23454034-23461724[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00023 0.017 15.6 3.4 1 23 289 311 289 311 0.98

2 10 0.0011 0.083 13.4 10.5 1 23 318 340 318 340 0.96

3 10 0.00011 0.0083 16.5 6.5 1 23 346 368 346 368 0.98

4 10 0.00035 0.025 15.0 2.3 1 23 374 396 374 396 0.95

5 10 2.5e-05 0.0018 18.6 0.5 1 23 402 424 402 424 0.97

6 10 8.3e-06 0.0006 20.1 0.1 1 23 430 452 430 452 0.98

7 10 7.9e-05 0.0057 17.1 2.0 1 23 457 480 457 480 0.97

8 10 0.0009 0.065 13.7 0.2 1 23 486 509 486 509 0.94

9 10 0.00019 0.014 15.9 0.1 1 23 567 589 567 589 0.98

10 10 0.005 0.36 11.4 4.9 5 23 740 758 732 758 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00023	0.017	15.6	3.4	1	23	289	311	289	311	0.98
2	10	0.0011	0.083	13.4	10.5	1	23	318	340	318	340	0.96
3	10	0.00011	0.0083	16.5	6.5	1	23	346	368	346	368	0.98
4	10	0.00035	0.025	15.0	2.3	1	23	374	396	374	396	0.95
5	10	2.5e-05	0.0018	18.6	0.5	1	23	402	424	402	424	0.97
6	10	8.3e-06	0.0006	20.1	0.1	1	23	430	452	430	452	0.98
7	10	7.9e-05	0.0057	17.1	2.0	1	23	457	480	457	480	0.97
8	10	0.0009	0.065	13.7	0.2	1	23	486	509	486	509	0.94
9	10	0.00019	0.014	15.9	0.1	1	23	567	589	567	589	0.98
10	10	0.005	0.36	11.4	4.9	5	23	740	758	732	758	0.92

Sequence Information

Coding Sequence: ATGTGCGCTGCACAGAGCAATCCGCCGCCCTTCGGCTACGCTTGGGGCTTTGCAGACAACGGCAGCCGTACCGCCGAATCGGTATTGGAAATATCGCCAAATATTAATTACACCGTTAGTGGGGAATCGATGCCCTATTTGCTATCCACGGATGGATCATTGGCCGTACAAAAGGATGTTAAAGGTGCACTGGCTGGCAATAAGGCAAATGTGGTGCGTCGCATGTTCGTGGTGAACGATTCCTCATTTCCGCACGGTACACAAAGAGTAATTACCACAGGCGCCACCTCGACGGTGGTGAAGAAACAGGACTCAACTACTCAACAGGTGTTGAGTATAAATTCACTCGATAAGAACTATCTTCTGGTCGATCAGGCCACAGCCGCAGCTGCAGCAGCCGCCGCTGCTGGTGATCCGGCGGCTCATCATCATACGTTGACGAATGGTAGCATTGTTGATTCCAAGACAGGACAAACCGTTTTGACCTCGGGCGCAGCTGCTGCTGCCGCTGCTAAATCCCATTTCGGTTCAATAGGTGCACTGCATCTAACGCAAGAGGAGTGCAACGAGATATTGATAAAGCGTGCCATCGCTGCCGGCCACCATCAGACGCACACAATCACCACCGCCGACGGAGCGCATCATCATAGCACGGCGCCAGGCGCGACACCAAGTGACCTACTTCCTGGTATTTCAGTTCAAGTACAGAAAGTAATACAAGGACTCGAAGATAACGAGGACTCACAGGGCGACGCACCCAACTTAAAGTTGGAGCCAGGCACATTAGAGTTGTCCCCAAAGACCGAACTACAGGAATCAATGCATTTCAGCGAAACGGACGCCACTATTAAGAAGGAACGCCCGTACAGTTGTGACGAGTGCGGCAAGTCCTTTCTGCTCAAGCATCATTTGACCACACACGCCCGCGTCCACACAGGTGGTGAACGTCCACATATCTGCACCCATTGCGGCAAGAGCTTTGCCCACAAACATTGCCTGAATACCCATTTGCTGTTGCATTCAACAGACCGCCCATATCAGTGCCAGGAGTGCAAGAAAAGTTTTACCCTTAAGCATCATCTGTTGACGCATTCGCGTGTCCATAGCCGGGATCGGCCATTTGTGTGCCAGGAGTGTGGACGCTCATTTCCACTGAAGCGTCACCTGGTCACTCATAGTAAATTTCACGCAGGCGAACGTCCATACGTCTGCGAGGAATGCGGTGAGAGTTTTGCCCAGGAGAATCATTTGATTATGCACTCGCGCTTTCACGGGTCATTGAATCCATTTGTCTGTTCTGAGTGCGGTGCTTCATTTCCCCGCAAATTCCAATTGGTAAATCACGGACGTATACACGGCAAAATTCCACATTCGTGTACCATTTGTGGTAAAGAATTTCTACAGAAGCGCACACTAGTTTCCCACATGAGGCGCGTACATACGGGCGAGCAGGCCCATCCCTGCGTGAGTTGTGGCGAGGGTTTCCCCACAAAGGCCGAACTTCATCAGCATGTTCGTGCCGCTCACAATGGCGTTAATCCCAATACAAGTAGCGCCACTATAATAGCTAATCAGCAGCAGCTACAACAGCCTCACCATCACCCCGGACATCCGCAGACCATTGTGGTTAGCAATGCGGCCAATTCTACACTACTTACGGTCTCCACAACCGACGCAAATGGTGTGGCACGACCACAGTTTGTTTGCCGTGAGTGCGGAAGCGCCTTTAATAGCCGCGAAGCTTTGGCGCTGCACTTGCGTCTGCACACTGGCGACAAGAGTCTAATGACCGATTTGTGCGCCCTAACGGCAGCTCTACCAGGACATTTTTTGAGCACAGCCAGTCTAAATCCAGGCACTGTTGTAACAGCCAATCCCAATTTGGTTGGTCAGAGTCCAGTGCCAGTGCAAATTATTTCGTCCACCGGCCAGGTAATGCAACAAACCACGCTGGTGCAGGCCGCCAATTCGACCCATCCGCAGGCTGTTGTCACCGCTGTGCCCCACATGCCATTGCATGCCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGGATTCGCTGCAAAACATGGGCTGATGCAGCATAATCGGCGACATCCCAACGGCGGTTGCACGGTCCGCACCCATGTCTGTGAGTGTGGCAAGGCATTCTTCCAGAAGAATCATCTGATGTTGCATCAGCGCCAGCATTTGGAAACAAAGCCAGCCATATCACAGCAACAGGAGGCCAATGCCCAGCAGCAACAGCAAGTGGTAGTGGCCACATCCACGGCATCTGGACAGCAACAGCCGACACAGGTTCAGGTGCAGATATTACCCGATGGTCATATGGCACATGGCAAGGTTATTAAGTACGAGATATGCCGAAATGTATTGCAGGAGGATCAGGCAGCACAACAACAGCAGCAGCAACAACAACAATCGGGCATGAGCACTGACTAA
Protein Sequence: MCAAQSNPPPFGYAWGFADNGSRTAESVLEISPNINYTVSGESMPYLLSTDGSLAVQKDVKGALAGNKANVVRRMFVVNDSSFPHGTQRVITTGATSTVVKKQDSTTQQVLSINSLDKNYLLVDQATAAAAAAAAAGDPAAHHHTLTNGSIVDSKTGQTVLTSGAAAAAAAKSHFGSIGALHLTQEECNEILIKRAIAAGHHQTHTITTADGAHHHSTAPGATPSDLLPGISVQVQKVIQGLEDNEDSQGDAPNLKLEPGTLELSPKTELQESMHFSETDATIKKERPYSCDECGKSFLLKHHLTTHARVHTGGERPHICTHCGKSFAHKHCLNTHLLLHSTDRPYQCQECKKSFTLKHHLLTHSRVHSRDRPFVCQECGRSFPLKRHLVTHSKFHAGERPYVCEECGESFAQENHLIMHSRFHGSLNPFVCSECGASFPRKFQLVNHGRIHGKIPHSCTICGKEFLQKRTLVSHMRRVHTGEQAHPCVSCGEGFPTKAELHQHVRAAHNGVNPNTSSATIIANQQQLQQPHHHPGHPQTIVVSNAANSTLLTVSTTDANGVARPQFVCRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAALPGHFLSTASLNPGTVVTANPNLVGQSPVPVQIISSTGQVMQQTTLVQAANSTHPQAVVTAVPHMPLHATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFAAKHGLMQHNRRHPNGGCTVRTHVCECGKAFFQKNHLMLHQRQHLETKPAISQQQEANAQQQQQVVVATSTASGQQQPTQVQVQILPDGHMAHGKVIKYEICRNVLQEDQAAQQQQQQQQQSGMSTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01556276;
90% Identity: -
80% Identity: -