Dneb011410.1
Basic Information
- Insect
- Drosophila nebulosa
- Gene Symbol
- -
- Assembly
- GCA_018150735.1
- Location
- JAECWO010000001.1:27436046-27438370[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.019 1.4 9.6 8.9 3 23 257 277 255 277 0.97 2 12 0.0023 0.17 12.5 0.5 1 23 283 308 283 308 0.94 3 12 0.00092 0.067 13.7 0.8 1 23 315 340 315 340 0.93 4 12 0.00075 0.055 14.0 3.7 1 23 349 371 349 371 0.97 5 12 1e-05 0.00076 19.8 0.1 1 23 378 400 378 400 0.97 6 12 0.012 0.88 10.2 0.4 1 23 406 428 406 428 0.97 7 12 0.00079 0.057 13.9 0.8 1 23 434 457 434 457 0.98 8 12 0.0099 0.72 10.5 3.7 1 23 463 485 463 485 0.96 9 12 1.1e-05 0.00081 19.7 0.8 2 23 492 513 491 513 0.97 10 12 4e-05 0.0029 18.0 1.0 1 23 583 606 583 606 0.96 11 12 0.029 2.1 9.0 6.5 1 23 612 634 612 634 0.94 12 12 0.00019 0.014 15.9 3.0 1 23 640 662 640 662 0.98
Sequence Information
- Coding Sequence
- ATGGATCCGGAACGTGGTGAATACTCCATACACTCCGTCTGCCGCACTTGTCTGGCTACATTGGAGAACGTCATGGCCTACGACTTGTTCCTCATACCAGGATTGGCCAAGAAGCTGTGTATCTGCACTTCGTTGTCAGTGGAGTCGCAGGACGGATTCCCCAAGAATCTGTGTATTAATTGCTATACCAAGCTAAACGACTTAAATGAGTTTCAGACAATGTGCGTGGATTCGGTACAGAAATTCCAGGAAATGGTTGCCAGCCAGGCATTTGCTATTGGGGGCCCTGAGTTGAATGTGGCACGTGAAGATGAGGAAGAGGATATCAATTTTGACCCTTTGTTGAATTCAAAAGTGGAAACCATGGACAATGAGGAGGAGGTTATGAAAATGCTAGAAAATGTGGATAAAGAAGAAGTAGAAGATGTGTTGCAGCAGGAGGAGGAGGAAGAGGAGGATCAAGATGACGATGACGATAATGACTTTGCAATGGAGAGTGGTAATAATAATGATGGTAATGATACAGACTTTGCCTCAAATAGCAGCGATGATGACGTTCCATTGGCCCAAAGATCAACGCGAGCTAAAAAAGATATTAAAATGCAGCCAAAAGCAAAAAAACAAAAAACAAAGATCAAAGAACTGAAAGAGGAGGAGGACAACAATGCATCTTCCAGTGATACCGAATCGCCTGATGATAATGTCAAAGCTAAACCCAAACGCAAAAGGATTCCAGCCGCTGAGCGTCACATGCATCGCCTAATCGATTGCCACATTTGTCATCAGAAATTCAAAAAGGCCTCCTGTTACGAGGAGCATATGAAGCATCATAATGATCTCCTGCCTTTCCAATGTACAGTGGAATCCTGCCGCAAGGGTTTCACCACAGCCAATGGCCTTAAAGTTCATATAGAGCATGCTCATACAGAAGAATCCAAAATGCACGCATGTACTGTTGAGGGCTGCAACAGATTCTTTGCTCGTATATCGCTCCTCAATGTCCATTTGAAGCGAACCCATAAATTAAAATTGCCGCCACGAGAATTTCCCTGTACAGATTGCGAAAAGATCTTTCGATGTCAAACTGCTCTCAAGAAGCACATGTTCAAGCATACGGGAAGAGAATTGCCATTTGCCTGTGAAATCTGTGGCAAACGTTTCCCCATCAACAGTGCTCTACGAGATCACTTGCTTCGCCATGCTGGAATCAAGAATCATGTGTGTCCCTATTGTGGTGTGGGCAAAACGACGCGTCAAGAGTGGAACAATCATATCCTAACCCATACCAAGGAAAAGAAATTCAAATGCAAACTCTGCGATCATGCTTCGACCAATAAGCAAGCTCTAGGCAATCATATCAAGGTCGTACATGAGAAGCGCAAAGATTTTGCTTGCCAATACTGCGGAAAAACCTTTGGCAAATCTTTCTCTTGCAAAATCCACGAGCGTAGTCACACGGGTGAAAAGAATAGCGAGTGTAAAATCTGTGGCAAGATCTTTTTACAGGAATCGAGCCTTACCAAGCATTTAAAAACCCATGAGAAGCGCGAATTGCCCAAGACGCAAGGGGCCAGCGATGATACCCCATCAACTTTACCTGATCCCAAAAAGAAAACCTACAATTCAGGACGCGTCGAACGTGTGGATATATCCCAATTGGCTGGCACAGCTGTTAATCCCATACCCTCAGTCGCGCTACCTTCGTGGGGTCTGCAAAATGACTCATTTAGCAAAAAAGAAGGCCAGCACATTTGTCCCGATTGTGGCAAGGGTTTCAATCACATTGGCAATATGAAACTGCACTATAAAGTCGTTCATCTGAAAGTTAAAGATTTTTGCTGTCGCTTCTGTCCCAAGCGTTTCGCGAAAAAGCATTATCTACGCGAACACGAATACATTCACACCGGTGAGAAGCCCTATGAATGTAAGATCTGTGGCAATCATTTTCGCCAAGATCATGTGTTGAAGGTCCATATGAAAGTTCACAATAAGCCACCGAAACCACCCAAGCAGCCGGCTAAGCCTAAGAAGTTACCGAAATCTGAAAATCCACCAAATAAACGCCAACCACCATTTAAACAGTTCGAGGATCCAGCTGCCGAACGAGCCGCGGCCACAGCCGAACTATTGGCCTGCCAAATCGAGGAGAATGAAACCAAGCGCAAGGCGGAGTTGGAGCTACGCAAGATTCAAGAGGCAGCAGTGGAGCAACTAAGCAAACTGGGGCTACAACAGGCACCAATAAATACCTATGACAGTTTGTATGCCCAAAAAACTGTCGAGGAGCGAACTCCAGTAGATGCTCTAAAATTGGATCATGTGTGA
- Protein Sequence
- MDPERGEYSIHSVCRTCLATLENVMAYDLFLIPGLAKKLCICTSLSVESQDGFPKNLCINCYTKLNDLNEFQTMCVDSVQKFQEMVASQAFAIGGPELNVAREDEEEDINFDPLLNSKVETMDNEEEVMKMLENVDKEEVEDVLQQEEEEEEDQDDDDDNDFAMESGNNNDGNDTDFASNSSDDDVPLAQRSTRAKKDIKMQPKAKKQKTKIKELKEEEDNNASSSDTESPDDNVKAKPKRKRIPAAERHMHRLIDCHICHQKFKKASCYEEHMKHHNDLLPFQCTVESCRKGFTTANGLKVHIEHAHTEESKMHACTVEGCNRFFARISLLNVHLKRTHKLKLPPREFPCTDCEKIFRCQTALKKHMFKHTGRELPFACEICGKRFPINSALRDHLLRHAGIKNHVCPYCGVGKTTRQEWNNHILTHTKEKKFKCKLCDHASTNKQALGNHIKVVHEKRKDFACQYCGKTFGKSFSCKIHERSHTGEKNSECKICGKIFLQESSLTKHLKTHEKRELPKTQGASDDTPSTLPDPKKKTYNSGRVERVDISQLAGTAVNPIPSVALPSWGLQNDSFSKKEGQHICPDCGKGFNHIGNMKLHYKVVHLKVKDFCCRFCPKRFAKKHYLREHEYIHTGEKPYECKICGNHFRQDHVLKVHMKVHNKPPKPPKQPAKPKKLPKSENPPNKRQPPFKQFEDPAAERAAATAELLACQIEENETKRKAELELRKIQEAAVEQLSKLGLQQAPINTYDSLYAQKTVEERTPVDALKLDHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00604267;
- 90% Identity
- iTF_00604267;
- 80% Identity
- -