Dneb016224.1
Basic Information
- Insect
- Drosophila nebulosa
- Gene Symbol
- -
- Assembly
- GCA_018150735.1
- Location
- JAECWO010000031.1:20041257-20043509[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.33 24 5.7 0.3 1 23 97 119 97 119 0.81 2 15 4.2e-05 0.0031 17.9 1.0 2 23 125 147 124 147 0.96 3 15 9.1e-06 0.00066 20.0 1.4 1 23 160 182 160 182 0.98 4 15 2.9e-05 0.0021 18.4 4.1 2 23 188 209 187 210 0.95 5 15 6.9 5e+02 1.5 0.1 4 17 225 238 225 239 0.86 6 15 5.5e-06 0.0004 20.7 2.6 1 23 273 295 273 295 0.99 7 15 0.00016 0.011 16.1 0.9 1 21 361 381 361 383 0.92 8 15 1.6e-05 0.0012 19.2 5.2 2 23 397 418 396 418 0.97 9 15 1.8e-06 0.00013 22.2 3.7 1 23 450 472 450 472 0.99 10 15 0.0046 0.33 11.5 2.4 1 23 533 556 533 556 0.96 11 15 0.0009 0.065 13.7 0.3 1 20 562 581 562 583 0.95 12 15 0.027 1.9 9.1 0.2 2 23 606 627 605 627 0.97 13 15 0.0002 0.015 15.8 1.5 2 23 634 655 633 656 0.95 14 15 3.6e-05 0.0026 18.1 0.2 2 23 694 715 693 715 0.97 15 15 0.012 0.84 10.2 1.5 1 23 721 743 721 743 0.97
Sequence Information
- Coding Sequence
- ATGGAGGACAAACTGCAAGAGCCTGAAATACAGGATAAATTTAAATTTGGCGTGAAGCAAGAACCGGAGTTAGATCTGGATACAGATGAACCACCTACTGTACATTTCACTGATCGAGATGAGATTCCAGAGGCAGAACACTCATCACATGGTGTGATACATCTAGAACCCAGCATGGATCTCAGCGCTAATGACTTCAATGGACAACCTTATTACAGCGGAGTGCCTGAACTACATGTTCAGGGGTTCCAGATAACTTTCCTACCAGAATCCAGCGAATCCCGTGTGTTTAAGTGTCCCCACTGCCCAACAGAATATTTAGAAGAATCAATTTTGCTAAGACACATAATGGATCACCAAAAGGTTCTTACTAAGTGTCCACAATGTCCGAGGACGTTTGCTTTTTATGAGAACATGAAGAAACACCTCCAGAAGATTCATGGACTACTGGAATATAAAGGGGATGAAGAAGGCGAATTTAAATGCCCTGACTGCTTTAAAGAATTTTCAAACAAACCTGATTTTTCCAATCATTTATTGAAACACTCTAAAGAGAATCTTAAGTGTCCGCATTGTCCAAGGATCTTTAAGACTTCACAACTCATGACAACCCACGTTCGGACACATCATTCCGAAATACTACCTGAGCAAAATTCCAGTGTTTTAAAGGCCCCTCATTGTCCCAAACAATGTACAAATCCGGCTACTTTTATGAGGATGCAAAAAGCAAAAGAGGAAAGCACGCAGATGTTAGATAGATACATCGCGGTAGATAATAACCCCGAAAAGAAAGTCCATCACCACTTTGGAGAGAACTTCAAATGTCCACATTGTCCAAGGATTTTTAGGAAGTCAGAACTTATGAGAACCCATGTCCGGACACATTCTGAAATACTGCCTGAGCACAATTCCAGTGTATTAAAGTCCCCTCATTTTCTCAATCAATGTACAAATCCGGCGACTTTTATGGACCCCATGAGGACGCACAAAGTAAAAGAAGAAAGCCCACAGATGTTAGATGGACACATCGCGGTAGATCATAACCCCGGAAAGAGAATCCATCACCACTCTGGAGAGAACTTCAAATGTCCGCATTGTCCAAGGATCTTTAAGACTTCACAGCTCGTGAGAATCCATATCTGGACTCATTTTACTGAATTAGTGCCTGGTCAGAATTCCACTGTATTAAAGTGCCCTCATTGTCCGAAACGATGTAAAAATCCGACTACTTTTATGAACCACATGAGGATGCACAAAGCAAAAGATGAAAGCCCACAGATGTTAGATGGACATATCGCGGTAGATAATAACCCCGAAAAGAAAGTCCATCACCACTCTGGAGAGAACTTCAAATGTCCGCATTGTCCAAGGACTTTTAAGAATTCACAACTCATGAGAACCCATGTCCGGACACATTCTGAAATACTGCCTGAGTACAATTCGAGTGTATTAAAATCCCCTCATTGTCTCAATCAATGTACAAATCCGGCTACTTTTATGAACCCCATGGAGACGCACAAAGTAAAAGAAGAAAGCCCACAGATGTTAAATAGATACATCGCGGAGGATCATAACACCGAAATGAAAGGCCATCTGCATAAGTGTCCTGCGTGCGTTAAAGAATATGCCAAATATCATAATCTTGTGAAGCATTTACGAGAGAGTCACAAAGGAATATTACTTTACAAGTGCCCGCATTGTGCGAGAGCGTTTGCTTACCCTAAGAGACTAAAAAACCACGTCGTGAGCTGTAACAAAGCGAATAAGGTGACTCATCCCGGAAAACAGTACGTCCCACTAGAAAAACGCCGTATCAAGTGTGGTCAGTGCTCACTAGGATTTTTTAGTGCGGATAGGTACCGTGTACACTTACGGTGGCACGCAGGAGAAACATCAGTGAAGTGTCCGCATTGTCCTAAGACGTTAAAAAACTACGACGGCATACAAAAACACATTCTTGTACATCATCCAAAGGTAGATAAGTTTATTGATGAAGATGATGAACAGGTGGATTTAAAAGACTTGGACGAAAGTGAAAGTAAAGACAATTCCGAAAGCAAAACTCGACACAGACTAACCCAATGTCCTCTCTGTCCAATGGAATTCGATAATAAAGACGACTTAATTACCCATAAACAAACTCACACCGGCACTATCCGGTTCAAATGCCCTCAGTGTTCCAAAGGATTTTTAAGAAAGGACAGGTACCTCTCACACCTGCAATTGCACGCAGAAAAGTCCGCTTCGTGCTAA
- Protein Sequence
- MEDKLQEPEIQDKFKFGVKQEPELDLDTDEPPTVHFTDRDEIPEAEHSSHGVIHLEPSMDLSANDFNGQPYYSGVPELHVQGFQITFLPESSESRVFKCPHCPTEYLEESILLRHIMDHQKVLTKCPQCPRTFAFYENMKKHLQKIHGLLEYKGDEEGEFKCPDCFKEFSNKPDFSNHLLKHSKENLKCPHCPRIFKTSQLMTTHVRTHHSEILPEQNSSVLKAPHCPKQCTNPATFMRMQKAKEESTQMLDRYIAVDNNPEKKVHHHFGENFKCPHCPRIFRKSELMRTHVRTHSEILPEHNSSVLKSPHFLNQCTNPATFMDPMRTHKVKEESPQMLDGHIAVDHNPGKRIHHHSGENFKCPHCPRIFKTSQLVRIHIWTHFTELVPGQNSTVLKCPHCPKRCKNPTTFMNHMRMHKAKDESPQMLDGHIAVDNNPEKKVHHHSGENFKCPHCPRTFKNSQLMRTHVRTHSEILPEYNSSVLKSPHCLNQCTNPATFMNPMETHKVKEESPQMLNRYIAEDHNTEMKGHLHKCPACVKEYAKYHNLVKHLRESHKGILLYKCPHCARAFAYPKRLKNHVVSCNKANKVTHPGKQYVPLEKRRIKCGQCSLGFFSADRYRVHLRWHAGETSVKCPHCPKTLKNYDGIQKHILVHHPKVDKFIDEDDEQVDLKDLDESESKDNSESKTRHRLTQCPLCPMEFDNKDDLITHKQTHTGTIRFKCPQCSKGFLRKDRYLSHLQLHAEKSASC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -