Basic Information

Insect: Drosophila navojoa
Gene Symbol: chn
Assembly: GCA_001654015.2
Location: NW:2928-21023[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.0011 0.064 13.2 1.6 1 23 327 349 327 349 0.97

2 6 0.081 4.6 7.4 3.4 1 23 355 378 355 378 0.95

3 6 0.00021 0.012 15.5 0.7 1 23 513 535 513 535 0.99

4 6 0.22 12 6.0 0.1 1 23 539 562 539 562 0.96

5 6 2.2 1.2e+02 2.9 0.1 3 23 567 588 566 588 0.92

6 6 0.028 1.6 8.8 1.4 3 23 1399 1420 1398 1420 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.0011	0.064	13.2	1.6	1	23	327	349	327	349	0.97
2	6	0.081	4.6	7.4	3.4	1	23	355	378	355	378	0.95
3	6	0.00021	0.012	15.5	0.7	1	23	513	535	513	535	0.99
4	6	0.22	12	6.0	0.1	1	23	539	562	539	562	0.96
5	6	2.2	1.2e+02	2.9	0.1	3	23	567	588	566	588	0.92
6	6	0.028	1.6	8.8	1.4	3	23	1399	1420	1398	1420	0.97

Sequence Information

Coding Sequence: atggcaacactAATACCAGCGACAGGATGCAACACAGCGAGCGCACAGTCCTCAAATGTTGAGGCCACATATGAAGATATGTTCAAGGAAATCACACGTAAACTATACGGCGAGGAGACCGGCAACGGTTTGCATACGCTCGGCACGCCGGTGGCTCAGGTGGCCACCAGTGGACCCACGGCGGTGCCCGAGGGCGAGCAGCGCTCGTTTACGAATTTGcaacaaattgaTCGCACCGCCGCGCCCAGCATTGAGTACGAAGCAAGTGGTGCTgcgggcggcggcagcggcaacaacgtGGCCACAACCCAGGCCAATGTTatccaacaacagcagcagcagcagcagcaatcagaGTCGGGCAACTCTGTGGTGGtcagcgccagcggcagcggcgcctCAGTGGTGCCGGCGCCCAGCGTCGCAGCCGTGGGCAGCTTCAAGTCCGAGGATCATTTGAGCACAGCTTTCGGTCTGGCTGCCCTAATGCAGAATGGCTTTGCCGCCGGCCAGGCGGGCCTGCTGAAGGccggcgagcagcagcagcgctgggCGCAGGAGACGGGCGCagcggagcaacagcagccgcagctggtGCAGTGGACAACGGGCGGTAAGCTGCAGAGCTATGCGCAAGtgagtcagcagcagcaacagcaacagcagcagcaacaacagcaacagcagcagcaacaacaacagcagcagcagcaacaacagcatcagagCACGCCCAAGTCCAAAAAACATCGTCAGGAGCACTCGGCGGAGCTGATCTATGCCAGTCCCTCCACATCGGCCAATGCGGCCCAGAACCTGGCCCAATCCACGCCCACCTCAGCGCCCACCaattcgagcagcagcagcggcggcggcagcagctctggctctggcggCGGCAGTCGCAGCAAGAAATCCTCCCAGGCCCAGGCAgcggccgccgcagccgcagcgaaCGGAGTGCACATCGTGAAGCGCTACGCGTGCACCCATTGCCCCTACTCGACGGATCGCCGGGATCTGTACACACGCCACGAGAACATCCACAAGGACGAGAAGCCCTTTCAGTGCTATGCCTGCCTCAAGCAGTTCAACCGCGCCGATCACGTCAAGAAGCATTTTCTGCGCATGCATCGCGAGCTGCAGTACGACATCAATAAGACGCGCCGGCATGTGCCCGCCGGCAGCGGTGGTGGCGGCAGTGGCTCCGGCGTCGGCTCGCATCATGCGGGCGGCCGTGGCAACGTGACGATCAATGCGACGGGCGTGAACATTGATAATGCCTTCCTGGAGGCACAGCGACATCCCACCTCGACCAGCATGAGCATTGCGGAGACCATCGAAGCGGTGGCCTCCGCTGCGGACATGCCGCTCGCCCAGCTGAAGCAGGAGAAGTTGGACGATGGCTcagtgctgccgctgcatgTGGCCGCCGTGATGAACAGCGCCCAGCAGCCGGTGGCCAGCTCCAGTTCCGGttcgggcagcagcagtgccgcCGGCTCCGGCCTGCTGAAGCCGAAGCGCGAGAAGCGCTTCACCTGCTGCTACTGTCCCTGGTCGGGCGCCGACAAGTGGGGCCTCAAGCGTCACCTCAACACCCACACAAAGCCCTTCGTTTGCCTGCTCTGCGATTACAAGGCGGCGCGCTCCGAGCGCCTGGCCACCCACGTGCTCAAGGTGCACAACAAGCGGGCGTGCAGCAAGTGCTCCTACCTGGCCGACACCCAGGAGGAATACCAAATTCACATGAGTGATGTGCATCCGCACGATAATCGTCCAGCgcgcagcagtagcagcaacaacagcggcagcaacaacaacaataacaacggcggcaacaacaacaacaatggcaacaatggcaacaacaatgcaacgcATAGCCAAAACTTGAATGTCTTGCGTACGATTGGCAACACGCTCGTGGCCAACAATCAGCTGAACACGTTTCACAATGCCGGCAATGCTTTTGGCACGTCGAGCGGCGGCGGCCAGACCGTTGGCAATGTGAGCGGCAGCGGTGCCGTTACCATctacaccaccaccaccaatgAGGGCGTGtctggaggcggcggcggcgctggcggtggcggtggcggcagcagcggcaacatcaCCGGCGGCCCCCTGCAGGAGATCATCGTGAATCCCACCTCAATGGTGGGCTGGCGTCTCAGTGCCAATGGCTCCCTGATACCGCCGCACGATCTGCTCACCGGCAGCCTGCCGAATGCGGCGACACAGAAACGCGGCTCGGAGCGTTTATTTCAATACCTCGAAGCCGAGGGCAGCGATCCGGAGGACTATGCGCGTCTGCTAAAAATGGACGCAATTAGTCGCAATACAGCTTCGGTCGCTCAGGATTTTCATAAAGCGGGAGGCGTGCACGAGTTGAAAATACCAGCAAATCATCAACTCCTGTTCAATAATAAACTGCCTTCGCAATGGACGACACGAGAGGCTGCAGCGCTATTGCACAGCCTGAGCAGCATGGGCGGccatcacagcagcagcaacagtaacagcggcagcaacatcaacaacaacaacagcagcagcagcagcagcagcaacggcggcaacATTGGCCAGCGTCAAAAGTTTGGCGTTATGCGTGCCAGGCAGCACTCGACGGGCGAGGATGATGAGAATACACCGTCGTCGGCATCCTCCTCTTCGTACTCGGGCGACGAGTACAACATGTCGGGCGCTAGTTCACCCATGAAATTGTCGCGTCatgccaacagcaatggcaaaagcTTGCGCTCGTCGAGCGAGCACGAACATGAGAGCGAGCTGAAggagcagagcaacaacaacaacagcaacagcaacagcagcagcaaggcgCTGATGGCAGCGGCATTTCTGGAGGCGGCAGCCTACGAGCAGACGGCCATTGAGCTGCTCGCCAGCAAGCGAAAGCTCAAAATTGAGTATGACGAAGATCAAGagaatcagcagcaacaacaactgcagctacagcaacagcaacagcagcagcagcagcgagtgcAGCTTATTAAATCGTCTCCCGCGTATAAacttaacaataacaacaataaccacaataataataacaacaacaacaacaacaacagtcacaGCTATTACAAAGAGAAATCTCACAGAAATGCCATGCATCATTGTCCACAGGATGACAAGGAGAACAACACCAGCAGGTCTGAGGCAacggccgcagcagcggcagcagcagccatggcaactgcaacagctgctgcagcagcggctgccgctgttggcactgcagcagtggctgcagtaacagcagcacccaacagcaacagcaacaacaacaacagcaacaacacaccCTTTCTCACCCAAATGGAGTACCAGAATCTCAATCGCATTGGCACACAGTTTCAGAATTATGTTAAAgatattattaacaaatactATGCAGCTGAGACGCCTCTGATGCTGGCCGCCGCCGCGGCAGCGCTGCCGACAGCAACTACGACGGGCCAGCAACAGTTGTCGCCCGGCAAACGGCGACGTCTGATGAGCGAGACGGAGGAGTACATTGAGTATCTGCGCAACAAGGAGGACATTACACTGACCATAACACCCAAGGTGCCtaccggcagcagcaacagcaacatcagcagcgcTGCGCCGCCAAAGTTAACAGTGGCGCCGGCGTCGCAGCCCCAGTCGCTGCTCAAGCGTCAACTAGATCTGGCAGCACCGCGCAAAAGTCCCAAGAAGCCGGCTGTTAGTCAACATActctcaacagcaacagcagcaactgcaacaacaacagcaacatcaacaacagcgccAATAACAGCTGCGCTGCTAGCGCCTCGCGCAAGTCCCTGAATcagctggcaacgctgctgccactgctggcCGATGCTGCCAGCAAACAGGAGTATTTAACAGCGCCGTTAGACTTCAGCAAAAAGTCCGATGCAGAGACAGCGCGCAGTTCGCGCAAGCAGGCGCAGCCAAAGAAAATACGCCTCTCTCCGGAGGCGGTGGTTGCCATGCTGCGCGACAAGCATCTCAATAAGCTGGTGCACCAGAGATTGGGCTGCGCCAGCTGCACGGCCAGTCGGCGGCGCAATGGCGGCGGTGGCATTAGCTTCAACTATCATACGCTTGGCTCTCTGGCGCTGCATCGGTTTTGGAAGCATCGTGCTCTGAGAGTTGCGTCGCACGGCTGTCGGCAGTGCAGCGCACAGTTTGAGCGGCGCTACAGCTTGCAGTTACATCGTCGCCTGAAGCATGCCAAACTGTAA
Protein Sequence: MATLIPATGCNTASAQSSNVEATYEDMFKEITRKLYGEETGNGLHTLGTPVAQVATSGPTAVPEGEQRSFTNLQQIDRTAAPSIEYEASGAAGGGSGNNVATTQANVIQQQQQQQQQSESGNSVVVSASGSGASVVPAPSVAAVGSFKSEDHLSTAFGLAALMQNGFAAGQAGLLKAGEQQQRWAQETGAAEQQQPQLVQWTTGGKLQSYAQVSQQQQQQQQQQQQQQQQQQQQQQQQQQHQSTPKSKKHRQEHSAELIYASPSTSANAAQNLAQSTPTSAPTNSSSSSGGGSSSGSGGGSRSKKSSQAQAAAAAAAANGVHIVKRYACTHCPYSTDRRDLYTRHENIHKDEKPFQCYACLKQFNRADHVKKHFLRMHRELQYDINKTRRHVPAGSGGGGSGSGVGSHHAGGRGNVTINATGVNIDNAFLEAQRHPTSTSMSIAETIEAVASAADMPLAQLKQEKLDDGSVLPLHVAAVMNSAQQPVASSSSGSGSSSAAGSGLLKPKREKRFTCCYCPWSGADKWGLKRHLNTHTKPFVCLLCDYKAARSERLATHVLKVHNKRACSKCSYLADTQEEYQIHMSDVHPHDNRPARSSSSNNSGSNNNNNNGGNNNNNGNNGNNNATHSQNLNVLRTIGNTLVANNQLNTFHNAGNAFGTSSGGGQTVGNVSGSGAVTIYTTTTNEGVSGGGGGAGGGGGGSSGNITGGPLQEIIVNPTSMVGWRLSANGSLIPPHDLLTGSLPNAATQKRGSERLFQYLEAEGSDPEDYARLLKMDAISRNTASVAQDFHKAGGVHELKIPANHQLLFNNKLPSQWTTREAAALLHSLSSMGGHHSSSNSNSGSNINNNNSSSSSSSNGGNIGQRQKFGVMRARQHSTGEDDENTPSSASSSSYSGDEYNMSGASSPMKLSRHANSNGKSLRSSSEHEHESELKEQSNNNNSNSNSSSKALMAAAFLEAAAYEQTAIELLASKRKLKIEYDEDQENQQQQQLQLQQQQQQQQQRVQLIKSSPAYKLNNNNNNHNNNNNNNNNNSHSYYKEKSHRNAMHHCPQDDKENNTSRSEATAAAAAAAAMATATAAAAAAAAVGTAAVAAVTAAPNSNSNNNNSNNTPFLTQMEYQNLNRIGTQFQNYVKDIINKYYAAETPLMLAAAAAALPTATTTGQQQLSPGKRRRLMSETEEYIEYLRNKEDITLTITPKVPTGSSNSNISSAAPPKLTVAPASQPQSLLKRQLDLAAPRKSPKKPAVSQHTLNSNSSNCNNNSNINNSANNSCAASASRKSLNQLATLLPLLADAASKQEYLTAPLDFSKKSDAETARSSRKQAQPKKIRLSPEAVVAMLRDKHLNKLVHQRLGCASCTASRRRNGGGGISFNYHTLGSLALHRFWKHRALRVASHGCRQCSAQFERRYSLQLHRRLKHAKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00547681;
90% Identity: iTF_00502869;
80% Identity: -