Dnav000027.1
Basic Information
- Insect
- Drosophila navojoa
- Gene Symbol
- -
- Assembly
- GCA_001654015.2
- Location
- NW:44745-48186[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.02 1.1 9.3 0.5 2 23 320 342 319 342 0.96 2 10 1.6 92 3.3 0.2 6 23 352 369 352 369 0.97 3 10 5.4e-05 0.0031 17.4 2.3 1 23 375 397 375 397 0.98 4 10 0.0004 0.023 14.6 2.4 1 21 410 430 410 433 0.87 5 10 4.3e-05 0.0025 17.7 0.7 1 23 441 464 441 464 0.97 6 10 2.1e-05 0.0012 18.7 1.0 3 23 472 493 470 493 0.92 7 10 0.0022 0.13 12.3 0.4 2 23 505 527 504 527 0.97 8 10 0.00067 0.038 13.9 7.0 1 23 534 557 534 557 0.93 9 10 1.9e-06 0.00011 21.9 1.2 1 23 563 585 563 585 0.98 10 10 4.6e-05 0.0027 17.6 1.4 1 23 591 614 591 614 0.97
Sequence Information
- Coding Sequence
- ATGGCAGCGTGTGTGCTTTGTTTTCGCTGCTGCAACAATGATGAATCCTATAAAATATTCTCCGAACTTGGTTTGCGGCTCAACATTTGCAAAACAatcaacaaacatttttggctTGAGCTGAGCAGCGCAACTGGTGAGCACGAGCAAATATGTCGCCAGTGCTGGGAGTGCGTGAGCAGCTTCAATGAATTCTATCAGCGAGTCTACAATGCCCATCAGGAGAGACGCAGCGACGTGAAGAATGTGCAGATCGAGTTCTGTGACGAATCCGAGGCAGCAAATCCATTGGCGTTTGGCGGTGAGCTGGATGCGCTGGCTGAGGATTTTTTTGCCACGAGCGATGTCAAGGTGGAGGTGAACGAACTCGAGCCCCTGCCCAAGCTTGAAGTGCTCGAAGAGCAGTTGCTGGAGCAGAGGAGCGCTGCTACAAAGAGACCGAGTGCTGAGCAGCCAGCGAGTGCTAAGCGACGCATTAAAAAAGAACAGCCAACGGTCAACAGTGATTCAGATGGCGATATACCTTTAGCCGAGTTTCTAGATCTGAAAGCATCTGCAGCGAAGGGAGTTAAAGGACAGCCGTTGCGTCGTAGCACACGCCGCGGGCTACGTTCCAAAACGCCGCCAATATCCCCGCCCAGCTGCATGAAGAGCGAGAACGATTCcgatgatgataatgacaaGGAGCTTCTAGCTGCGGAGGCAGTGCTGGGCACTGATGACAGCGCCAGCTCGAGCGAAACCAGCGACAGCGACTCAGACAACAGTTTGCCGGACATGGAGCCAGAGGAGCGATATGCAGAGATACCCAAGCGTGTTGTGGTCAAGCCGAAGAAGTATCGGAAACGCCCCAAGCCTCTGATTCCACCTGTGCGAATGAGCCGCGAGGAGATCGAGAAGCGGAAAGCGCAACAAGACGAATTCGATAAGATCATCATAGATTTCTTCAAGAAGCTGCCGTGCCATGTCTGCAATCTGCTGGTGCCCAACTTCGGAGACATGCGGCGCCATCAGCGTATGTCCCACAACATGGAGAGTGGCTTCATTGCCTGTTGTGGTCGCAAGTTTCACATACGCCGCGCACTGGCCGAGCATGTGCTGGTCCACAAGAATCCCGAGCACTTTATGTGCACACAGTGCGGTCGCATATTCCACGATTCCAAAAGTCTCGAGACGCACGAACAGACGCATACGAATCCACAAGCGGATACGAAGGATAAACGCATGTATCAATGTGATAAGTGTCCCAAATGCTTCACCACAAAGGCTGCTGTGGAGTATCACAATGTGTCCAAGCATGTGCCCAAGTCGGATTTCAAATACACCTGCCCAGAGTGCAACAAAAAAGTGCCCACAGAACGCAAGCTGAAGGAACACTTGCGCTATATGCATGATCCGGAAACTGCCATCATTTGCGACAAATGCGGCAAGACGTTGCGCTCCCAGGCGAATCTTAAGAAACACCATGAACTGGAGCATTCCGATAAGCCACGGCCAAAGCCCGATCCCGTACAATGCGAGATATGCGGCACTTGGCTGCGCCACTTGTCAGGGCTCAAGCAGCACATGAGCACGGTGCATGAGCCGCCCGGTGGTGAGCATCGATGCCACATCTGCGACAAAAAGTCCACAAATTCGCGAGCACTCAAACGCCATATTTACCACAACCATCAGTGCGAGCGAAAGTTTCGATGCACCATGTGCGAGAAGGCGTTCAAGAGGCCACAGGATCTTCGAGAGCACACGTCTACGCATACAGGTGAGGTGCTATACACCTGCCCGAACTGCCCGCAGACGTTCTTCTCGAATGCCAACATGTACAAGCATCGCCAGCGCTTGCATCGCGCCGAGTGGGAGGCGGATCGCAAGAAGCCGCTGCCACCGAACATAATGCAACAAGCAGTGGTCGCCACAACGGCCATGAAGAAGCGTCAAACCGCCGACTCGACCATTGCTGCCACCCAGAAGCAGGAGacaaacaactgcaacaatagTAATAGTATTTAA
- Protein Sequence
- MAACVLCFRCCNNDESYKIFSELGLRLNICKTINKHFWLELSSATGEHEQICRQCWECVSSFNEFYQRVYNAHQERRSDVKNVQIEFCDESEAANPLAFGGELDALAEDFFATSDVKVEVNELEPLPKLEVLEEQLLEQRSAATKRPSAEQPASAKRRIKKEQPTVNSDSDGDIPLAEFLDLKASAAKGVKGQPLRRSTRRGLRSKTPPISPPSCMKSENDSDDDNDKELLAAEAVLGTDDSASSSETSDSDSDNSLPDMEPEERYAEIPKRVVVKPKKYRKRPKPLIPPVRMSREEIEKRKAQQDEFDKIIIDFFKKLPCHVCNLLVPNFGDMRRHQRMSHNMESGFIACCGRKFHIRRALAEHVLVHKNPEHFMCTQCGRIFHDSKSLETHEQTHTNPQADTKDKRMYQCDKCPKCFTTKAAVEYHNVSKHVPKSDFKYTCPECNKKVPTERKLKEHLRYMHDPETAIICDKCGKTLRSQANLKKHHELEHSDKPRPKPDPVQCEICGTWLRHLSGLKQHMSTVHEPPGGEHRCHICDKKSTNSRALKRHIYHNHQCERKFRCTMCEKAFKRPQDLREHTSTHTGEVLYTCPNCPQTFFSNANMYKHRQRLHRAEWEADRKKPLPPNIMQQAVVATTAMKKRQTADSTIAATQKQETNNCNNSNSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00508523;
- 90% Identity
- iTF_00573516;
- 80% Identity
- -