Dnav006133.1
Basic Information
- Insect
- Drosophila navojoa
- Gene Symbol
- -
- Assembly
- GCA_001654015.2
- Location
- NW:30152-31664[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0007 0.04 13.9 1.9 1 23 185 208 185 208 0.97 2 8 0.00013 0.0073 16.2 0.6 1 23 214 237 214 237 0.98 3 8 1.7e-06 9.6e-05 22.1 0.3 1 23 240 262 240 262 0.96 4 8 4.6e-06 0.00026 20.8 4.4 1 23 268 292 268 292 0.97 5 8 1.5e-05 0.00087 19.1 0.3 1 23 298 320 298 320 0.99 6 8 1.9e-05 0.0011 18.8 2.3 1 23 326 348 326 348 0.98 7 8 0.00046 0.027 14.4 3.9 1 23 354 376 354 376 0.96 8 8 8.4e-06 0.00048 19.9 0.0 1 23 382 404 382 404 0.98
Sequence Information
- Coding Sequence
- ATGTTGAAGCAGTGTCTTGTCAATGTGGACTTCTCGCGACTGCAtgtcaatcagcagcagcgcccaaAATGTGGCGAAATATTCTACGAAAGCGAAAACGAATTCTGCAGTTTCCAGCTGGTTTGCTGTCTCTGCGAGATGAAACATTTTGCGTTTGATGACTTCTCGATGCACATACGCAACGTACATTTCGACAAGCAGGGCAAACCGCGTACACAAGTCAAGGCCGATAAAAATGACGCATGTCAACCGTTGCCTCATTTAAATGCGACAGCATATACAGGCGAGGACGGACGGATCCAGGGATCAGATGAGGATGACAACGACGACAATGCATTGCGAGTCTGTTCGTTCGACGAGGTCAAGCTGGAAACTGTACAGctggaaaacaacaaaaatgggCGGGCCGAGGACAGCTGCCATAGTGCAGACGAACTCGGTGCACCCAGAGCAGGGTCCCCGATCTTCagtgatgttgatgatgatgacgaggcAACTGATAGCGAAACGGAAGCGCAATCTGTATTTAAGAAACAACCCGAGCCCAAGGAGTACCCATGCAAATACTGCAGGGGCAAATACACAACTCAGAAGTACCTAAATATGCATGTTAAGGTGAGGCATCCGCACCCGAACGGCTTCAAGTGCACCGATTGTGATGCCACCTTCGACGTGCAACGCGCCATGTTATCGCATCGTCGCAAGGAACACACAGAGTTTCCGTGCAACGTGTGCGGCAAGGTGTACAAAAGCTCACGTACTCTTCTACGCCATGTGCAGGCCCACTCGGGTCTGCGGCAATTCAAATGCGAACATGAGAGCTGCGGCAAGTCTTTTGTTAGCCAGCACAACTTGACGTCGCATCGTCGCGTCCACAGCACAGAACGGAACTACGTGTGCGAGCTATGTGGCTACCGCTCGCGCTACCGCGATGCACTCATTGTGCATCGGCGCACGCACACGGGCGAGAAGCCGTTCAAGTGTCAGACTTGCGCGCGCTGTTTCGCTTCGAAATCGCTGCTCAACGAGCACCAAGCCATGCACTCCACGGAGCGGCCGTACAAGTGCGACAACTGCGAGGCCTCCTTCTCCCGCCCCAAAGCCCTCTACCATCACAAACATCTGCATTTGGGCGTCAAGAAGTTCAAGTGCAAGATCTGTGGCAATGCTTACGCCCAGGCAGCGGGTCTCTCAGCCCATATGCGTGGTCACAAAGCGCAGGCCATCAATGGCATTGTTGATGGCGGCTCAGCTATAGTCTGTCCACCGCATCTTTAA
- Protein Sequence
- MLKQCLVNVDFSRLHVNQQQRPKCGEIFYESENEFCSFQLVCCLCEMKHFAFDDFSMHIRNVHFDKQGKPRTQVKADKNDACQPLPHLNATAYTGEDGRIQGSDEDDNDDNALRVCSFDEVKLETVQLENNKNGRAEDSCHSADELGAPRAGSPIFSDVDDDDEATDSETEAQSVFKKQPEPKEYPCKYCRGKYTTQKYLNMHVKVRHPHPNGFKCTDCDATFDVQRAMLSHRRKEHTEFPCNVCGKVYKSSRTLLRHVQAHSGLRQFKCEHESCGKSFVSQHNLTSHRRVHSTERNYVCELCGYRSRYRDALIVHRRTHTGEKPFKCQTCARCFASKSLLNEHQAMHSTERPYKCDNCEASFSRPKALYHHKHLHLGVKKFKCKICGNAYAQAAGLSAHMRGHKAQAINGIVDGGSAIVCPPHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00520084;
- 90% Identity
- iTF_00479640;
- 80% Identity
- -