Basic Information

Insect: Drosophila navojoa
Gene Symbol: -
Assembly: GCA_001654015.2
Location: NW:1089673-1092188[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 4.8 2.7e+02 1.8 0.4 1 12 38 49 38 55 0.79

2 10 0.0027 0.16 12.0 2.9 2 23 225 246 224 246 0.97

3 10 0.00039 0.022 14.7 1.2 1 23 272 293 272 293 0.97

4 10 0.00025 0.015 15.3 0.7 1 23 299 321 299 321 0.95

5 10 4.9e-05 0.0028 17.5 0.5 1 23 347 369 347 369 0.97

6 10 7.2e-08 4.1e-06 26.4 0.9 1 23 375 397 375 397 0.99

7 10 0.00095 0.054 13.5 4.6 1 23 403 425 403 425 0.98

8 10 1.2e-05 0.0007 19.4 0.4 1 23 431 453 431 453 0.98

9 10 1.8e-05 0.001 18.9 0.1 1 23 457 479 457 479 0.99

10 10 0.0053 0.3 11.1 0.0 3 23 503 524 501 524 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	4.8	2.7e+02	1.8	0.4	1	12	38	49	38	55	0.79
2	10	0.0027	0.16	12.0	2.9	2	23	225	246	224	246	0.97
3	10	0.00039	0.022	14.7	1.2	1	23	272	293	272	293	0.97
4	10	0.00025	0.015	15.3	0.7	1	23	299	321	299	321	0.95
5	10	4.9e-05	0.0028	17.5	0.5	1	23	347	369	347	369	0.97
6	10	7.2e-08	4.1e-06	26.4	0.9	1	23	375	397	375	397	0.99
7	10	0.00095	0.054	13.5	4.6	1	23	403	425	403	425	0.98
8	10	1.2e-05	0.0007	19.4	0.4	1	23	431	453	431	453	0.98
9	10	1.8e-05	0.001	18.9	0.1	1	23	457	479	457	479	0.99
10	10	0.0053	0.3	11.1	0.0	3	23	503	524	501	524	0.95

Sequence Information

Coding Sequence: ATGTCAGGACCCAGTGGGAAAAATTACGGAATAGCTTCGGACTTGCACGTGGacgaaaataaagaaagcaaTATTGACCACTTCGTAATTGATACGGCTGTggatgaaatatatttttgtgaggACTGCAATAATGACTTCGATAGCATCGAGTCGTACAACCAGGCGCACAGTGGCCCCGATGGCTGTGGGGCCACGGTCGAGGCCAGATCCAAAGTCATGGTTCATGCAGTTGAGATCAAAGAGGAGTTCGAAGACACCATGGTAGATATTGATTCCATGGTCGTTGAGGATGATCTGGTTGAGGAGCTCGATGAGGCGAGCGAACCGCAGTTGTGGGAGGTGCTGGAGGATGACGGTCAAGTGAATGTCAAAGTCGTCAATGAAGCTGAAATTGCATCCGAAGTTGAGccagaggaggaggaggaggaggaggaggtggaaGCTGAGGAAGTGGCTAATAAATCGGAACGTTACTTTTGCTTCGACTGTCACAGCATATTTGAGACTCGGCAGAGTGCAGAGGACCATAGTTGTCCCCAAGGTGAAGCAAATGGCGAAGCACGCGGCAAAAGCAGCAACGCCAAGCTAGCCAAGACACAGACGCCAATGCGCCGAAAGGTCGCAGCTGCCGCggcttccagcagcagcagcaacaacagcagcgttACAGTGTGCGACATTTGCAAGACGCAATTCAGCTCGGCCAAGTGTCTCAAGTTCCATATGCGCATTCACAACAAGCGCGCGCCCAAGTCCATACAGGACGCTCTGCCCGTGGGTGCTCATCAGCAGTACAATGAACTGGATCAATTCTACTGTGAGATATGCAACAAGAGCTTCGAGCAGAACCTGTTGACGGTGCACAAGCAAATGCACCAGAGCCAGGAGCAGTTCTTGTGCGGCACTTGCAATCGAAAATTCGAAAATGCTACCAACTATGAGATGCATTTGAAGATTCACGAACGTGCGCtgaacagcaatagcaatagcaatgccAATAAAAAGCCTGCCTCTGCGAAGAAGGATAAACCGGGATTTGCCTGCCAATATTGTGAGCGTGTCTTCTCCCGGCCGTACGAGAAGGTGAAGCACGAGCGCGTTCATACCGGCGAGAAGCCCTACAGCTGCGAGGTGTGCGGCAAGACCTTTCGCGTCTCCTACTCGCTGACGCTGCACCTGCGCACGCACACTAACATACGGCCCTATGTGTGCACCACTTGCAATAAGCGATTTAAATCGTATCAGGTCTATTCGCATCATTTGCGCATTCACAGCTCGGACCGCCTATACGCCTGTGATAGCTGCCCGAAGGCCTTTCGCACCTCGGTGCAGCTCTATGCCCATAAGAATACGCACACGAAGCCGTATCAGTGCGCCGTCTGCAATCGGCCCTTTGCCTCGCTGTATGCCGTCAAGGCGCACATGTCAACCCACAGGACCAACGACGCCAAAGGCGTCAGCAGTGCCGCCATCAAgagccagcagctggcgaaCAAATATTGGTGCGTTACTTGCGGAGCGGAGTATGCACGTCCCTTTGCCCTGCGTCTTCACATGAAGGCCGCCCATGGGCATCCGGATGATGCGGACACACGATTGGCCAAAGTGCCTGCTCCCGAAGATGACGAAGACGATGAGGACAACGATGAGGAGATTGTTGTACCGGACACCGAGACGGCCGTCCTCATCGCAGCAGCCAAGGCCGATTCAGCCTATCTGGATGCAGCCGCCAATGATGTGGACGTAATGGGCGCTGTTCCCAAGTACGAGGAGTGCATTGAGGTATGCACGGATGCGTTCGATGTGGAGACATTTCACAGCGAGGAGATTATCACCGACTGGCTAAagtga
Protein Sequence: MSGPSGKNYGIASDLHVDENKESNIDHFVIDTAVDEIYFCEDCNNDFDSIESYNQAHSGPDGCGATVEARSKVMVHAVEIKEEFEDTMVDIDSMVVEDDLVEELDEASEPQLWEVLEDDGQVNVKVVNEAEIASEVEPEEEEEEEEVEAEEVANKSERYFCFDCHSIFETRQSAEDHSCPQGEANGEARGKSSNAKLAKTQTPMRRKVAAAAASSSSSNNSSVTVCDICKTQFSSAKCLKFHMRIHNKRAPKSIQDALPVGAHQQYNELDQFYCEICNKSFEQNLLTVHKQMHQSQEQFLCGTCNRKFENATNYEMHLKIHERALNSNSNSNANKKPASAKKDKPGFACQYCERVFSRPYEKVKHERVHTGEKPYSCEVCGKTFRVSYSLTLHLRTHTNIRPYVCTTCNKRFKSYQVYSHHLRIHSSDRLYACDSCPKAFRTSVQLYAHKNTHTKPYQCAVCNRPFASLYAVKAHMSTHRTNDAKGVSSAAIKSQQLANKYWCVTCGAEYARPFALRLHMKAAHGHPDDADTRLAKVPAPEDDEDDEDNDEEIVVPDTETAVLIAAAKADSAYLDAAANDVDVMGAVPKYEECIEVCTDAFDVETFHSEEIITDWLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00493819;
90% Identity: iTF_00540529;
80% Identity: -