Basic Information

Insect: Drosophila navojoa
Gene Symbol: -
Assembly: GCA_001654015.2
Location: NW:9956-16381[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 9e-08 5.2e-06 26.1 1.8 2 23 147 168 147 168 0.97

2 9 2.5e-07 1.4e-05 24.7 1.5 1 23 174 196 174 196 0.98

3 9 1.1e-07 6e-06 25.9 1.1 1 23 202 224 202 224 0.98

4 9 6.4e-07 3.7e-05 23.4 0.7 1 23 230 254 230 255 0.95

5 9 9.8e-05 0.0056 16.6 3.0 1 23 260 282 260 282 0.97

6 9 0.00035 0.02 14.8 3.3 1 23 288 311 288 311 0.98

7 9 0.00015 0.0088 15.9 2.7 1 23 317 339 317 339 0.99

8 9 3.6e-06 0.00021 21.1 0.8 1 23 344 366 344 366 0.98

9 9 0.0049 0.28 11.2 0.3 3 23 374 397 372 397 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	9e-08	5.2e-06	26.1	1.8	2	23	147	168	147	168	0.97
2	9	2.5e-07	1.4e-05	24.7	1.5	1	23	174	196	174	196	0.98
3	9	1.1e-07	6e-06	25.9	1.1	1	23	202	224	202	224	0.98
4	9	6.4e-07	3.7e-05	23.4	0.7	1	23	230	254	230	255	0.95
5	9	9.8e-05	0.0056	16.6	3.0	1	23	260	282	260	282	0.97
6	9	0.00035	0.02	14.8	3.3	1	23	288	311	288	311	0.98
7	9	0.00015	0.0088	15.9	2.7	1	23	317	339	317	339	0.99
8	9	3.6e-06	0.00021	21.1	0.8	1	23	344	366	344	366	0.98
9	9	0.0049	0.28	11.2	0.3	3	23	374	397	372	397	0.94

Sequence Information

Coding Sequence: ATGGACACCATTTGTAGGCTGTGTTTTCAGACAGCAACGTTATTCCAAGTGCCCGGCTATAGCATACCCACGTGCGTGCGTTGCTCAGAACAGTTGACAAACAATTCGAACTTCCATCAAGCGGTGCGAGTGCAGGACGGCGCAGCCGCTTCTGTAGCGGCCGCTGCggtagccgctgctgctgccgcatcaACAGTAGCTAGCGAGAGCGACACGGTGGCGGCACAGCTGACAAACGGCAGCGCTGTAGCTGctgtgctgcagttgcagcagcagcaacagcaacaacagcagcaacagcagcagcagcaacaacaacaacagcaacaacagcagcaacaacaacaacaacaacaattgcaatcaTCAAGTTCTTCCGAGAATCTACAATCGCAGGACGATTCTGAAGATGTGGATCTGATATTCAACGAGGAGGGCTCATGCCCGCTGTGCAACAAAACCTTCTCGCGTAAGTCCTCGCTCATGACGCACATACGCAATCATTCGGCTGAGCGCAAATTTGTGTGCAGCTACTGCCACAAAGGCTTCACGCAAGCCGCAAATTTGCGCAATCATGaacgcatacacacaaatgATCGGCCGTATCAGTGCGTGGACTGCGGCAAGACCTTCACTCAAATCACAAATCTTAATAATCATCGACGCCTCCACACCGGGGAGCGTCCCTTTGTGTGCAACGAGCCCGAGTGTGGACGCAGCTTTGCGCAGGTGACCAATCTGAACAATCACATGAAGTCGCATCACAAAGTGCAGCAGTACTGCTGCAACGTGTGCAGCAAGAAGTTCACGCAGGTCACCTCACTGAACCAGCATCTGCAGGCGCACGCCGGCGTCACCGGCTACTATTGTCCACGGTGTCCGGAGAAGAACTTCAagctgcagtcgcagctgcATACGCACATGAAGACGCATGGCCTGGCCTTTCCCTATGAGTGCAGCAAGTGCGATGAGAAATTTCTGCAGCAATCGCATCTGGATCAGCATCTGAAGATGCACGACGAGTTCAAGTTCAAATGCGATATATGCCCCAGCAGCTTTAACCAGGAGTCGTTGCTCAAGAAGCATGTGCAACGCCATGTGGAGGGTCGCTACCTGAACTGCCCGGTGGCCAATTGTGCCGAATCCTTTGCGGTGCGCCAGCATCTATCGAAACACTTGCTCACCAATCATTCGCATCAcgagctgccgccgccgaaGCGCTCCAAGAAGACGATCACACTGCAGTCGCCCCAACAGCCGCTGGCGATGATCGGGCAGCCTCTGTCGCTGCAGCACACGACGGGGCAGCgTGGCAGACCGCCCAAAAACAAGAATAAGACCTCACTGGCAGCCACGGCCATTAAAATAGAGATCAATGAGCCGTTGCATAGCCAGCACATCATCAGCAGTGCCAGCGGCCTTTCCATACACCAGCAGATCAATCAGcatatgcaacagcagcagcagcagcagcaacagcagcagcaacagcaacaacaacagcagcagcaacagcagcagcagcaccttcATCTGCCCATGGGTCAGGCGGTCAAGGCGCGCTTTATACCCACTAAATAG
Protein Sequence: MDTICRLCFQTATLFQVPGYSIPTCVRCSEQLTNNSNFHQAVRVQDGAAASVAAAAVAAAAAASTVASESDTVAAQLTNGSAVAAVLQLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQLQSSSSSENLQSQDDSEDVDLIFNEEGSCPLCNKTFSRKSSLMTHIRNHSAERKFVCSYCHKGFTQAANLRNHERIHTNDRPYQCVDCGKTFTQITNLNNHRRLHTGERPFVCNEPECGRSFAQVTNLNNHMKSHHKVQQYCCNVCSKKFTQVTSLNQHLQAHAGVTGYYCPRCPEKNFKLQSQLHTHMKTHGLAFPYECSKCDEKFLQQSHLDQHLKMHDEFKFKCDICPSSFNQESLLKKHVQRHVEGRYLNCPVANCAESFAVRQHLSKHLLTNHSHHELPPPKRSKKTITLQSPQQPLAMIGQPLSLQHTTGQRGRPPKNKNKTSLAATAIKIEINEPLHSQHIISSASGLSIHQQINQHMQQQQQQQQQQQQQQQQQQQQQQQQHLHLPMGQAVKARFIPTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00533229;
90% Identity: iTF_00572743;
80% Identity: iTF_00551737;