Basic Information

Insect: Drosophila nasuta
Gene Symbol: salm
Assembly: GCA_017165715.1
Location: Scf:15007-24465[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2.1e-06 0.00013 21.8 1.7 1 23 375 397 375 397 0.98

2 8 2.9e-05 0.0018 18.2 3.5 1 23 403 425 403 425 0.98

3 8 2 1.3e+02 3.0 2.4 5 23 689 707 686 707 0.84

4 8 3e-08 1.9e-06 27.6 0.2 1 23 713 735 713 735 0.98

5 8 0.00091 0.057 13.5 0.9 1 23 745 767 745 767 0.98

6 8 1 65 3.9 0.3 2 21 973 992 973 995 0.93

7 8 9.8e-06 0.00062 19.7 5.0 1 23 1160 1182 1160 1182 0.96

8 8 7.8e-08 4.9e-06 26.3 0.7 1 23 1188 1210 1188 1210 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2.1e-06	0.00013	21.8	1.7	1	23	375	397	375	397	0.98
2	8	2.9e-05	0.0018	18.2	3.5	1	23	403	425	403	425	0.98
3	8	2	1.3e+02	3.0	2.4	5	23	689	707	686	707	0.84
4	8	3e-08	1.9e-06	27.6	0.2	1	23	713	735	713	735	0.98
5	8	0.00091	0.057	13.5	0.9	1	23	745	767	745	767	0.98
6	8	1	65	3.9	0.3	2	21	973	992	973	995	0.93
7	8	9.8e-06	0.00062	19.7	5.0	1	23	1160	1182	1160	1182	0.96
8	8	7.8e-08	4.9e-06	26.3	0.7	1	23	1188	1210	1188	1210	0.98

Sequence Information

Coding Sequence: ATGTGTTCAATATTTCGTAATCGCATCAATTACCGGGGCACAGGTACACGCAGTACAACATCTGCTGGTAGTGGCAGCTCGACAGGTGCCGGAGCTGTTACTGGAGCAGGAGTTGGGGATAGAGATAATCTGCTGGCCAAGGAACTCAATGCCGACAGCAACAACAACGGCAGTATAGCGGATGAGGTGCCACAACTTCATCCGAATGCAGGAACAGATGGAGAACTACCAATGGAAGTATCGGTGGAAACATCCTTGCCATCGTTGAATGAAGACCAGCAGCCGGAGAACAGCAATGAGGCTCTGGATCTTTCCGTAATCTCTGGCAGTCGATTGCCCACATCGGGGCACGTCGCACTTGAAGCTTTACAACATACCAAAGTGGCGGTGGCGCAGTTCGCCGCAACGGCGCTAGCAGGAGCAGCCGATCCCAGCGATCTGGCCATGGTACAGTCGACGATCTTCAATGTGCAGCGCCAACATCTGATGCAACTGCAGCTCATCCAGCATCTACAGAGTCAATTGAAGAGAGCCGGAGGCGTGGTCGCTGCCCTCAGCAGACAGGGGCGGAACGATGAAGAGCGCGACGACGTGGAAGAGGAGGAAGATGCGGAAGTGGAGGCGGAAGCGGAGGTGGAGGAACAGAAGGTGCGAGAGACCGAGCAGGAATATCTGGTCAAGGGAAAGCCAAGGATGAATGGTGAAGTGCTCGAGGATGACCACGTGCGGCTTAAGGAGAGTTTAAAGACTGATGGGCATAACTTGACCTTGAAAATGGCAATCGAGTGCAATAAGGAAAGTGAAGGCGAACGGGAAAGAGAGCGAGAAAGAGAGCACATCAAGCGGGAGGATGAGCGCGAGATTGAGGCGGAAGTCGAACCCGAGACGGAGAATGAGTATCAACCGCTAATGTGCGATATCAGCTCCAGTCTGGCATCGAGTATTATCACCAACCACGACCCGCCGCCAGCGCCCAATGAGCCCAACTGCCTGGAGATGCTGCAACGCCGCACGGAGGAGGTATTGGATTCCGCATCGCAGAGCCTTCATGCTGCACAAATGCAAGAGGAGTACTCGGAATATGCCTCGAAAGAAGCACAGAGTCGCGGAGAGATCTTTAAGCATCGCTGTAAGTATTGCGGCAAGATCTTTGGCAGCTACTCAGCCCTGCAGATCCATCTGCGTTCCCACACCGGTGAACGACCCTTCCACTGCAACGTGTGTGGCAGCAAGTTCACAACTAAAGGTAATCTCAAAGTCCACTACCAGCGTCACACTCAGATCTTTCCTCCCATGATGCTGCCGCCTGTAGTAAATGGAGGGGCCATAGCAGGAGCAGGAGGAGGATCATCCTCGGGAAGTGCAGAACAGTTTGCCGCTCTGACGCCAATTCGGTTACCCTTTGTGCCACCCGCGCCTCTTGCACCGCCACCACCACCTAGCAGAGATCCTTGTGCCCAGGAGCAGCAGCAAGCGCAGTCAATACAGCAGATTCATCAACAGCAAGAGCAACAAATGCTTCCGCAGGCCGAGGATCTCAGTAAGTCGATTCGGGAGAAGTCTCAATCGCCCCTTGAACGTGCACAGACACCAACACCAAGTCCCATCCTACCTCCCATTCCTGTCATAACACCAAGTAAATCCGTGTCCGATCGTAATAGATGCCAGAGCGTAGTTCCAACGGATCCCTCACCTGAGAAACAAGAAAAGGAGAAGCCCAAAGATAGTCCCAAGCCAAGTCAAACGACACCCCGTCGGAATGGCAGTGTGCGAAAGCGACAGACAAGCAATGCAGGCAGTCCGCCAGGCGAGGATAGAGCGGCAGAGCATGCTGAGCATTTGCACATTGCCAAGCTCGTGCGTCGCTCCTCCGCTAGCAGGGATGGCTCATTGGGTCTGCCTGCCGGAACGGGGGCCGGAGAGTATTCACTGGCGCAGATGGAACGCATCATAGACAAGTCATGGGAGGATCTAATTGAGATAGACAAGACATCGGAGACGTCGAAGCTTCAGCAGCTGGTGGACAATATTGAGAACAAGTTGACGGATCCTAATCAGTGCATCTTTTGCCAAAAGGTTATGTCTTGCCGCAGCTCCCTTCAGATGCATATTAGAACCCACACAGGTGAAAGACCCTTTCGCTGCAAGATCTGTGGACGTGCCTTTGCCACCAAAGGCAATCTGAAGGCACACATGAGCATACACAAAATCAAACCGCCCATGCGTAGTCAGTTCAAATGTCCTGTGTGCCATCAGAAGTTCTCCAATGGCATCATTCTTCAGCAGCACATTCGCATCCACACTATGGATGATGGTAGCGCTGTGCAAGGTCAAGGGCAGAGCCAGAGTCTAGGAGCTGGCGATGTCGAACGTCTGGGCATTGAGGATCAGAACTCAAACAAGTCATTGGGTACTTCAGACACCCTGGACTTCTCCACCACTATCTCTGATCATTCAGGACAACGTTCCGAGTCGTCGCAGGGCGGCGACTTCGATGAGTTCATGACCATGGACAGCACAGACGATTCGCGTGACAATTCGAGTGCCACAACAATCACCACAACGCCTCTGGACAGAGAAAGAGATCGAGACAGACGACCCACTGCTCATGATTGCTGTGATGAACGTTCCAGATCCGATTTGGAGGGTGGTGGACGCGAAAGTACCAACGGTACCGAACTGCCTCCCATGGATCTCTCATCTCCATCGTCGGCAGCTGCGGCAGCGGCCCGTCTCTTTGGCGTAAACAACGGTGGAGCGGTGTTACCCATGCACGGCATGCCCCTGCTACCCCCAAATCTGCTGTTGATGGCCGCAGCTCGCGAGGAGATGCACGCCCTAGGACAGGCACATGCCAAGTTTCCGCTGTTGCCCTTCGGACCGCTCGGATTTATGGGTCTGCAACCGCCCCCCAATGTGTGCAACTTGTGCTTCAAGATGCTACCCAGTCTCCCCGCCTTGGAGGCCCATCTGCAATGCGAACATGCCAAAGAAGTTACAATTCCCTCGGTCCGCACCCACACTAACGAAGCGACGTCACCACACGCAGCCAAGCTCTCTCTCAATCCAAATCTGTTTGCCAAGAAGTCAAAGCCGCCATCGACGCCGACACCAACGCCGACGCCGACTGTGACTCCAACTCCAAATCCGATGCAGGATCTGATGCTGGCGCCGGCGGAGTCAGTGGCAACTAATGCGGCGTCCATCAAAGAAGATCCCGACTCCCAGCAGCTGCTGGCCGATGAGGCAGGCTGCGAGGGGAGTGCTGCAGCTGCTGTCACGTGCAACAACAATCCTACAACAACGAACAACATTAGCGCGGGCTTTCAGCAGGAGAGTGCAGCCGATGCGGAACAGTCCCTGATGAAGATGCAGCTGCATGCTCATCGCTTTCCAGCTAGTCCGCTGGACTTTCAACAGGCCTTGATGTCAGCCGGGCCGCCCAGCTCCAGCCTCGATCCGCCAATAAACAATAAGCATTTCTGCCACGTTTGCCGGCGCAACTTTAGCTCCAGTTCCGCGCTCCAGATCCACATGCGAACCCACACCGGAGACAAGCCCTTTCAATGCAATGTGTGCCAGAAGGCTTTCACTACCAAGGGTAACCTCAAGGTTCATATGGGCACGCACATGTGGACCAATCCAACATCGCGTCGTGGTCGTCGCATGTCCTTGGAGCTGCCTATGCGACCTGGACCTGGAACTGGTCCTGGTTCTACTGGTGCCCATGGAACAGCCACTGCCGAGCAGGAATTTATGCAGCGTCGACCTGAACTATTCTTTCCCTATTTGCCACCATTTTTCAACGGAATGCCCCCCAAGCCTGGTGAACTAAGTCCTGGTGCCTTTGGAAACATACCGCCTCCGCATTTTGCCAACGGTGCAAAGTATCCATATCCACCGGGTCTGCTGAGTTTTCCAGGCTTTCTAGGTGCAGGCCAGCATCCCCATCCGCATCCCCATCCATACGCCATGGAACGAAGGAGTACCAGCAAGTCGCCAACATCGGAGCCCGCACAGAGTCCATCGTCCCGTGAGGATGAAGGATCGCTGGGCAGCAATATCTGGCATCCCTTGAGTAGCATCAAGCTAGAGAACAATCAAAATGAGAGTACTGGCAACCAAAGCGAACTCGATCAAGATCTGGAACAGGAGGACAATGGAGATGGCGATGGAGTAGAAACTGGAGTTAGAGATGTCGATGAGGATGCCGATGTTGATCCGGAGGCGGGCGTTACAGAGCTTTCAGATCTAATGGCTAGGTCGGAGAAGTAG
Protein Sequence: MCSIFRNRINYRGTGTRSTTSAGSGSSTGAGAVTGAGVGDRDNLLAKELNADSNNNGSIADEVPQLHPNAGTDGELPMEVSVETSLPSLNEDQQPENSNEALDLSVISGSRLPTSGHVALEALQHTKVAVAQFAATALAGAADPSDLAMVQSTIFNVQRQHLMQLQLIQHLQSQLKRAGGVVAALSRQGRNDEERDDVEEEEDAEVEAEAEVEEQKVRETEQEYLVKGKPRMNGEVLEDDHVRLKESLKTDGHNLTLKMAIECNKESEGEREREREREHIKREDEREIEAEVEPETENEYQPLMCDISSSLASSIITNHDPPPAPNEPNCLEMLQRRTEEVLDSASQSLHAAQMQEEYSEYASKEAQSRGEIFKHRCKYCGKIFGSYSALQIHLRSHTGERPFHCNVCGSKFTTKGNLKVHYQRHTQIFPPMMLPPVVNGGAIAGAGGGSSSGSAEQFAALTPIRLPFVPPAPLAPPPPPSRDPCAQEQQQAQSIQQIHQQQEQQMLPQAEDLSKSIREKSQSPLERAQTPTPSPILPPIPVITPSKSVSDRNRCQSVVPTDPSPEKQEKEKPKDSPKPSQTTPRRNGSVRKRQTSNAGSPPGEDRAAEHAEHLHIAKLVRRSSASRDGSLGLPAGTGAGEYSLAQMERIIDKSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCKICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTMDDGSAVQGQGQSQSLGAGDVERLGIEDQNSNKSLGTSDTLDFSTTISDHSGQRSESSQGGDFDEFMTMDSTDDSRDNSSATTITTTPLDRERDRDRRPTAHDCCDERSRSDLEGGGRESTNGTELPPMDLSSPSSAAAAAARLFGVNNGGAVLPMHGMPLLPPNLLLMAAAREEMHALGQAHAKFPLLPFGPLGFMGLQPPPNVCNLCFKMLPSLPALEAHLQCEHAKEVTIPSVRTHTNEATSPHAAKLSLNPNLFAKKSKPPSTPTPTPTPTVTPTPNPMQDLMLAPAESVATNAASIKEDPDSQQLLADEAGCEGSAAAAVTCNNNPTTTNNISAGFQQESAADAEQSLMKMQLHAHRFPASPLDFQQALMSAGPPSSSLDPPINNKHFCHVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPTSRRGRRMSLELPMRPGPGTGPGSTGAHGTATAEQEFMQRRPELFFPYLPPFFNGMPPKPGELSPGAFGNIPPPHFANGAKYPYPPGLLSFPGFLGAGQHPHPHPHPYAMERRSTSKSPTSEPAQSPSSREDEGSLGSNIWHPLSSIKLENNQNESTGNQSELDQDLEQEDNGDGDGVETGVRDVDEDADVDPEAGVTELSDLMARSEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00562636; iTF_00520805; iTF_00614363; iTF_00509276; iTF_00595417; iTF_00579453;
90% Identity: -
80% Identity: -