Dnas012535.1
Basic Information
- Insect
- Drosophila nasuta
- Gene Symbol
- -
- Assembly
- GCA_017165715.1
- Location
- Scf:4430-8048[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.33 21 5.4 0.4 2 23 125 147 124 147 0.95 2 13 0.14 8.7 6.6 0.4 2 23 156 178 155 178 0.93 3 13 3e-08 1.9e-06 27.6 2.0 2 23 194 216 193 216 0.96 4 13 0.0051 0.32 11.1 9.1 2 23 478 499 478 499 0.97 5 13 1e-06 6.3e-05 22.8 2.8 1 23 505 528 505 528 0.96 6 13 0.00028 0.018 15.1 0.8 1 23 533 556 533 556 0.96 7 13 0.00012 0.0077 16.3 4.6 1 23 574 596 574 596 0.96 8 13 0.034 2.2 8.6 3.8 1 23 601 623 601 623 0.97 9 13 2.7e-05 0.0017 18.3 1.7 1 23 629 651 629 651 0.95 10 13 0.00027 0.017 15.2 0.7 1 23 657 679 657 679 0.98 11 13 2.8e-07 1.8e-05 24.5 2.7 3 23 687 707 686 707 0.99 12 13 1.9e-08 1.2e-06 28.2 1.0 1 23 713 735 713 735 0.99 13 13 1.3 80 3.6 5.2 1 19 740 758 740 763 0.88
Sequence Information
- Coding Sequence
- ATGAGCAAATCACCCGCAATGCCAGACAACATGATGACTCAATACGGCGGCGACTTTGATGCAGAGCGCGTGTGTCGCGTTTGCCTGCGAGAAGTGGGCGACTTCTATTTCATCTACGATGAGGCGCCCGTGGAGCAGGGCGCCAACATTGCCCAGATCCTCAACGAGTGCACGCGATACACGTGCGAGCGTTACGACAAGTTGCCGCATCACATGTGTGACACCTGCATCAAGGCGGCCTGTCAAGCGTATCGCTTTAAGCGCGACGCCGAGAAATCGTATCGCTCCTTGGTCGCGATGCTGGGCAGGACGCCAGCATTGAAGCCGAACAGCAACGAGGTCTGCACACAGACCGAACAGCTGGCCATGCTGCAGTGCGGCATGTGTAGCGAACAGTTCTTGAATGCGCTCGAGTTGCGTTTGCATCGCAAGCGACAGCATAAACAACAGCAACTGGAGCAGCTGCAGTGTCAGGTGTGTGCGGTACAGTTCCAGCAGTTCCGCCAGCTGCGCACACATCTCATCGAGCAGCACAATCAGCCGTCCACATCGCCGCTGCTGCGACGGCGACCGCGTCTCGAGTGTGGCGACTGCAAGCGCGTCTTCAGTCGACGCGATCATCTGCAGCGCCACATGCGCACAGTGCACAAGGAACGCGATGGTGTCGACGAGATGGAGGGGGAGCAGTCAATGGACACTCCATGGCCGGCCATTGATGAGGCCACCATGCAGAGCGGCGATGAGCTGGAATCGGCCGCTGTGCTGCTCAACAACTGCGCCGCTGACGATGAGGAGGAGCAGGGTCAGGAGCGGGATCAACAGAGTGCGTATCAGAGTCACACGAATCCCATATCGAGCAACGAGGAGGCGGATGACGACGACGAACTTGAGGCGGAGGCCAAGCAAACGCTGTGGCTGCAAATCAAGCCAGAGCCGGAGCTGGAGCAACTGGATGCAGATGACAAGCGTCGCAAAAAGCCGCATAGCAAGCAGCAGAAAGAGGAGGAGCTGGAGGAGGCGCATGTAAAAGAGGAAGAGGAGCTACTGCCAATTAAGCAGGAGCGTCAGCGCATGGATAGCGTGCGACAGCTGGAGGAGGGGGAGGAGGAGGAGGAGAACGTGGAGCTCTTCGAGGAAGCACTGCACAGCTCCGAAGAGGAGGAGGAGGAGGCGGATGACGAGGAAGAGGTAGAGGTAGAGGAGGAAGAGCAGGAAGAGGAAGAGGCCGATGAAAGCGACTTGGAGGAACTGGACGATGAGGAGAAGCCAACTGCAAGCGCGGAGACAAAAGTGCAAATTGTGCGCGAATATCTGCAGCAGGCAGGCACAGCAACTGGAACAGGAACAGGGACCCAATCAACAACTGGTGGAAAACAGCGACGTCGACGCCGCAACAAGCAAACAATCGATGCACAACCAAATCCCGAGAATCGCTGCGACATCTGTCAGCGCACGTTCTCACGCCACTGCCATCTGTTGCGCCACAAGCTGTCGCATCTGGAGAAGAAGCCGCACAGCTGTCCCCACTGCCCAAAAGCCTTTGCACGCAGCGATCATCTGAAGGCGCATGTCCAGAGTCTGCACGGCAGCAAGGAGCACAAGTGTGTGCTGTGCGAGGCGGCCTTCACACGCTCCGATGCGCTCGAGCGGCACAAGCTGAGCAAGCACAATGGCGAGGGACTCGATGCGAGCAGCGAACTGAAGCTGCAGCTCAGCGAACACACCTGCGAATACTGCGCGAAGCGTTTCTCGAGCAAAACCTATTTGCGGAAGCACACGCTGCTCCACACCGAGTTCCTCTATGCGTGCAAGAGCTGCGACGAGACGTTCAAGGAGCGGCAACAGTTGCGGTGCCACGAGAAGACGCACACCGGCCAGCGGAACTTCCTCTGCTGCATCTGCGGCGACAGCTTTGCGCGCAACGATTATCTGCGCGTCCACATGCGACGCCACAACGGGGAGAAGCCCTACAAGTGTCGCTACTGCATCAAGGCGTTTCCGCGTGCCACCGATCTCAAGGTGCACGAACGCTACCACACGGGCACCAAACCCAATCTGTGTAACACGTGCGGCAAGAGTTTCCATCGCGCCTACAATCTGACCATACACATGCGCACACACACCGGCGAACGTCCGTACAAGTGCGATCAGTGCCCCAAGAGCTTCAGCCAGAGCAACGATCTGAAGGCGCACATCCGACGCCATACCGGCGAGCGGTATAAGTGTCCGCATTGCGATGCCTACTTCCTGCAACTGTATCACATGCGCAACCATTGCCTCAGTGCCCACAACAAGCACATCGAGACGAAGACGGGGCGCCTGCAACGCACCGGTCTGCTCGATGAGCCAACGCACTCGCATCTGACCACCGTTGTGATGCCGCCAGCGGCGCCGACGACGACCACAACAACTGCGGCGGCGGTGGCGGCAACGACAACGATGGCTGTGCCATTGCCTGCGGCGGCCACGCCCCTTGTGCACTCGCCTGTCGCTTACAATACATCGTCGCCGGTGGCAACAGTGCAGGATGGATTTGTGAGCACCGCCAGCAATGCGGCAGCGACAGCAACGACGACGTCGACGACGACGCCGACACCTTTTGGCGCCTTCAACATAACGCCAGTTGTGATGGCGCATCTCATGTATAACCACGGCGGACAACACGACAGCCAGCTGAGCAATGCCAGCGGCAGCGAACGTGCAACGGGCAAATAG
- Protein Sequence
- MSKSPAMPDNMMTQYGGDFDAERVCRVCLREVGDFYFIYDEAPVEQGANIAQILNECTRYTCERYDKLPHHMCDTCIKAACQAYRFKRDAEKSYRSLVAMLGRTPALKPNSNEVCTQTEQLAMLQCGMCSEQFLNALELRLHRKRQHKQQQLEQLQCQVCAVQFQQFRQLRTHLIEQHNQPSTSPLLRRRPRLECGDCKRVFSRRDHLQRHMRTVHKERDGVDEMEGEQSMDTPWPAIDEATMQSGDELESAAVLLNNCAADDEEEQGQERDQQSAYQSHTNPISSNEEADDDDELEAEAKQTLWLQIKPEPELEQLDADDKRRKKPHSKQQKEEELEEAHVKEEEELLPIKQERQRMDSVRQLEEGEEEEENVELFEEALHSSEEEEEEADDEEEVEVEEEEQEEEEADESDLEELDDEEKPTASAETKVQIVREYLQQAGTATGTGTGTQSTTGGKQRRRRRNKQTIDAQPNPENRCDICQRTFSRHCHLLRHKLSHLEKKPHSCPHCPKAFARSDHLKAHVQSLHGSKEHKCVLCEAAFTRSDALERHKLSKHNGEGLDASSELKLQLSEHTCEYCAKRFSSKTYLRKHTLLHTEFLYACKSCDETFKERQQLRCHEKTHTGQRNFLCCICGDSFARNDYLRVHMRRHNGEKPYKCRYCIKAFPRATDLKVHERYHTGTKPNLCNTCGKSFHRAYNLTIHMRTHTGERPYKCDQCPKSFSQSNDLKAHIRRHTGERYKCPHCDAYFLQLYHMRNHCLSAHNKHIETKTGRLQRTGLLDEPTHSHLTTVVMPPAAPTTTTTTAAAVAATTTMAVPLPAAATPLVHSPVAYNTSSPVATVQDGFVSTASNAAATATTTSTTTPTPFGAFNITPVVMAHLMYNHGGQHDSQLSNASGSERATGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00472490;
- 90% Identity
- iTF_00472490;
- 80% Identity
- -