Dnas001339.1
Basic Information
- Insect
- Drosophila nasuta
- Gene Symbol
- -
- Assembly
- GCA_017165715.1
- Location
- Scf:131-1409[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.7e-12 1.3e-08 34.0 0.0 1 41 288 329 288 332 0.90 2 3 1.3e-14 3e-11 42.5 0.1 2 39 343 380 342 383 0.94 3 3 1.4e-11 3.1e-08 32.8 0.0 1 30 397 426 397 426 0.97
Sequence Information
- Coding Sequence
- ATGTTTGACTTTCTGCAATTGGTTTTAGATCCCACCGAACCGCTCGACATAGACAATCATTTGGCTCAGCAAATCCATCGGCTCGATCAATCTCCCATGCACTCGATAGCGCATCATCATACGACCGGCGACGAGAGCAACTCGAATCTGGTGCAGCATATCAAAAGCGAAGTGATTGAGGCCAAGCACCTGGCGCATGTGCAAGCCCAGCAGCAACAGCAACAACAGCAGCAACAACAACAGCAGCAACAACAGCAGCAGCAACAACAACAACAGCAGCAGCAACATCAGCAACATGCACATCATCATCAGCATTTGCACGCTCAGCAATTGTTGGCGCAAAGTCAGCAACAGCAGCAGCAGCAACAACAACAGCAGCAACAACAGCAGCAACATCAACAGCAACAACAGCAAGCAGCGGTGCATGCACAACATGCCACGCATGCTGCACATGCGGAAATCAGTGGTGCCACTGTCATGGAGATTGATCCGAGCCAGATCAAGCATGAGCCGGGCATGATAATAACGCCAGAGATTGTCAATATGATGTCCACTGGGCATATGGGTAAGTCGAATACAATTAGGATATATGTACTTGCAACTAACTGGCTCTCTCTCTCTCTCTCTATATCTCGTTTTACAGACATGTACAACTCGGATACGAGCGAGGACTCAATGATGATCGCCAACGGTTCGCCGCACGATCAGAATGAGCCGCATTATACGAATTTGGATCAGCAGCACGGCGGCCTGGGTGGCAGCGTTTGCGGCCCCGGCGCCGGTGGTGTTGGTGGTGGTGGCGGCATTGGTGGTGGTGGTAGTGCTGGCGAGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTGCGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCATCAACGACATTATGGCAACGTGCTCATCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGCGGAACCAAATCGTGGAACGAGGATGCATTGCAGAATGCGCTGGAGGCGCTCCGATCGGGTCAGATATCGGCGAATAAGGCATCGAAAGCGTTTGGTATTCCCTCATCGACGCTCTACAAGATAGCGCGTCGGGAGGGCATACGGCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACACCCGAGGATTTGGAGCGTGCATTGGAGGCGATACGCGCCGGCAATACGTCCGTGCAAAAAGCCAGCGCCGAATTCGGCATACCCACAG
- Protein Sequence
- MFDFLQLVLDPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHTTGDESNSNLVQHIKSEVIEAKHLAHVQAQQQQQQQQQQQQQQQQQQQQQQQQQQHQQHAHHHQHLHAQQLLAQSQQQQQQQQQQQQQQQQHQQQQQQAAVHAQHATHAAHAEISGATVMEIDPSQIKHEPGMIITPEIVNMMSTGHMGKSNTIRIYVLATNWLSLSLSISRFTDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGGSVCGPGAGGVGGGGGIGGGGSAGEKGQFNGPKAWTQDDMNCALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -