Basic Information

Gene Symbol
Cdc5l
Assembly
GCA_037043605.1
Location
JBAMBF010000536.1:3547000-3549355[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 8 8e+03 -3.0 0.0 4 18 139 153 139 153 0.89
2 5 2.8e-12 2.8e-09 36.9 0.1 1 41 232 273 232 278 0.92
3 5 0.0017 1.7 8.7 0.0 20 44 309 334 298 336 0.84
4 5 8.7e-09 8.7e-06 25.7 0.0 2 46 343 388 342 388 0.93
5 5 9.3e-10 9.3e-07 28.8 0.1 2 41 395 435 394 435 0.96

Sequence Information

Coding Sequence
ATGTGCGATGTGAAGAAAAAATACCAACAGGAATTGCAAGAAATATCAATACTGCTGTCTACCACAGCTAAAAGCAATGCAGACCCTCTGAAACTGAATCTGGAGCTGCAGCGGCGTCTTGTACAGGCGCGTGAACGTACTCTGAAGCTGCTGCGCATAGTTCGAGCTCGTTATGAACGGAACGAGACGATACTTGTAAGCCGCATAAAGACGCGGTCctacgcagcagcagcggccacCGAGGAAACCGTTGGAATTAGTGGAGCTGTGCTGCGCGGAGGAACGTTTCGATTTAAgggaaatttatattttcgcgATGTGGATGGACGAAGTTGTCCCAACAATGAAGATTACGAGCGGCGCTGCAGCAATGAGATGTTCCCCACCGATTTCGATCTGCGCTCCAAGCACATCTGGACTGTGATGGACAAGAAAAAAATCGTAATGGGTATTAAGCAGCAGCTGTTGGATCATGCAGCCTACACAGCGACAGAAGGCAAAACTGTTGGCAGGAAGGGGAGCAAGCGTAAGGCCATCGATCTGCACGAACAATCACTAGCTAATTTGCTGAAAGTTGTCGACAGCAGCTTCAGCATTGACTGGAATCAGATTAGCACACTTGATCTGGAGTATCGTCATTCGTCGTACAGCTGTGAGGCCATGTGGCTTGTGTATTTGCAGCCGCATCTTAAGCGCGAGGAGTGGACTGACGAGGAGGAGCAGATTTTGCTAGCGGCCGCCAAGGAAAACAAGATGCAAAATTGGAGAGCCATTGCGGCTATGGTGGACGGACGGTCCGACTATCAGTGCTTTGTGCATATGCAGACAGCGCTGCGCTCTAACCTGGACGTAAGGAGCACCATAAAATGGTGTAATCAGGATAACGAACGCTTGCGCGCAATTGCTTTAAAGAATACGGTTAACGGCGTTGTTAACTGGAATCAAGTGCTCGAACACTTTCCGAACAGATCGCGATCCACGTTAATTGGTCGCTATTTGTATGTTCTGCATCCTAACATTAGTCACGAACCCTTCACCCAAAAAGAGGATGTCATGCTTTTTGCTGCCGTTGAGGAATACGATGGCAAGTTTAATTGTATTCCGAGAACGCTCTTCCCCAATCGCTCGATTGCTCAGCTGCGCACACGATATAACAATGTGCTGGCGCAGCGTCATAAGACTGATCCCTGGTCAGTGAGTGATGATAAGAAACTGATTGCTTTTATTGAAGCACATGGCACCTCGCAGTGGGTGAATTGTGCCAAACATTTGGGCAATCACTCGCGCACGAGTTGTCGCACACGCTCTATAGTCATCCAGCGTTTTATAACGCATAATCCAAATGCAACGGTAGCAGACATTCCCCGTCGCAGGGTGCATAAAAGTGCTTCAGTAACTGCCGACAATTGGGAGCAACGTCTCCATGAATGGCAAGCCGATCCGGACTCACTGCTCAGTAACCCACCGGCCAAGAAGTCATACGTCAAGCAATCACGAAGTAACAACATCTATGAGTACTTCAAGTATGCATATAATCTCAATCTAGGATCGCCTGAGGCGCCAGTACCCCTGACCCTGGACGAACGTAATCTGCACAGAGTTGCTAATTCGCTGCGCTTCCAGCCGCCCAAAAATAAGGTCAATTTGATTCAAAGCACATGCCTGCCCAGTCAGCTGTGTCGCTTGTTTAACAAAGTGCTGCGTCAACTGCCTAAGGGCGAAGGAAGTGAATCATCTCCGCAGTTGCTGCCGCCGAATTGGTCAACGATGATGGGTTTTCGGGCTATATGCATATTGTCAGTGCAATGCGCTAATGATACCGATCCTGCGAGCGAATTGACTCCACCAATCAACTACGATGAATCTCAGCCAGCGATTCAGCTGTTCCGTCAACGCTTACGAACCCTTTTCTATCGCACTACGCTGCTGAGCCGACTGGAGACATCAACGTTCGATTTGCTACCGGCTGCATTGATGAAACTGCCACGTCCAGCTGTAAGTATCGGGATGTCGAAGATTCTACCGGGCCAAAACAGGCAGGAGGCACGGCCAGACACAGACTATAAATGCCCGACTAAAAAGGAAATAGCACGCAATCAAATTAAAGAGTTGAATTTAGCAAAATCTGAACCAACTGACCTTAAGAGggaaatcgaaataaattcaGATTAA
Protein Sequence
MCDVKKKYQQELQEISILLSTTAKSNADPLKLNLELQRRLVQARERTLKLLRIVRARYERNETILVSRIKTRSYAAAAATEETVGISGAVLRGGTFRFKGNLYFRDVDGRSCPNNEDYERRCSNEMFPTDFDLRSKHIWTVMDKKKIVMGIKQQLLDHAAYTATEGKTVGRKGSKRKAIDLHEQSLANLLKVVDSSFSIDWNQISTLDLEYRHSSYSCEAMWLVYLQPHLKREEWTDEEEQILLAAAKENKMQNWRAIAAMVDGRSDYQCFVHMQTALRSNLDVRSTIKWCNQDNERLRAIALKNTVNGVVNWNQVLEHFPNRSRSTLIGRYLYVLHPNISHEPFTQKEDVMLFAAVEEYDGKFNCIPRTLFPNRSIAQLRTRYNNVLAQRHKTDPWSVSDDKKLIAFIEAHGTSQWVNCAKHLGNHSRTSCRTRSIVIQRFITHNPNATVADIPRRRVHKSASVTADNWEQRLHEWQADPDSLLSNPPAKKSYVKQSRSNNIYEYFKYAYNLNLGSPEAPVPLTLDERNLHRVANSLRFQPPKNKVNLIQSTCLPSQLCRLFNKVLRQLPKGEGSESSPQLLPPNWSTMMGFRAICILSVQCANDTDPASELTPPINYDESQPAIQLFRQRLRTLFYRTTLLSRLETSTFDLLPAALMKLPRPAVSIGMSKILPGQNRQEARPDTDYKCPTKKEIARNQIKELNLAKSEPTDLKREIEINSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00498797;
90% Identity
iTF_00498797;
80% Identity
-