Dmon004587.1
Basic Information
- Insect
- Drosophila montana
- Gene Symbol
- -
- Assembly
- GCA_003086615.1
- Location
- LUVX01061703.1:29850-37818[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.3e-09 6.2e-06 25.9 0.1 16 40 358 384 355 387 0.84 2 4 2.6e-14 6.8e-11 41.7 0.1 2 39 399 436 398 439 0.94 3 4 6e-18 1.6e-14 53.4 0.0 1 45 453 498 453 498 0.98 4 4 6.1e-20 1.6e-16 59.8 0.0 1 43 505 548 505 549 0.97
Sequence Information
- Coding Sequence
- atgcGCTTGGGGTTGAGTGCGGCTCTGAGGCtgGGTTTGCTGCGCACCGCCgaacaattgaaaatcaaagGCCTCTGCGAGCCGGCTGAGAATGCGGATGATTTAAATGACGCGGCATCGGCGACAATAACCGTATCGGAGAACATACAGCAGGCGGTTGTTGGGAATATTGGACAAAATCAAACATCGATCGTGAGTCTACAGCAAACGGCAGACGGCAATTATATACCGGTGGCAACAGCTGGCGACGACTCCGATAGCGATAACAAGCCGCAAAAGATCTGCAAGACAGAGCAGTCGGTGGCCTCGCCGGCATCCAACTCGTCCACATCGAATAATGCAGCGGGCGTGAGCGGCCAGGCGATTGTGACACAAATTGTAGTAGCGCGCGAcggaaaagataaaaatatgaCTAGTTTAGGCATGGGCATGAACGGCGGTCTGTTGGGCGTGCCCATGGGCTTTCTGGACTTTACACCGGAACCACCAGCACCATCGGCCACACCTGTCACCGTAACGGAACACGTCGATCTATCGTGCAACCCCAGCACCGATACACGCGATCTATCAAatCCCACCGAACCGCTCGACATTGACAATCATTTGGCTCAGCACATCCATCGGCTCGATCAATCTCCCATGCACTCAATATCGCATCACCATGCAACCGGGGACGAGAGCAACTCGAATCTGGCGCAGCATATCAAAAGTGAGGTGATTGAGGCCAAGCACTTGcagcagcagcaggcggcggtGCATGCGGCACAGCATGCAGCGCTTGCCACGCATGCGGAAATCGGTGGCGCCACAGTCATGGAGATTGATCCGAGCCAGATTAAGCATGAGCCGGGCATGATTATAACGCCAGAGATTGTCAATATGATGTCCACCGGGCATATGGACATGTACAACTCGGATACGAGCGAGGACTCAATGATGATCGCCAACGGTTCGCCGCACGATCAGAATGAGCCGCATTATACGAATTTGGATCAGCAGCACGGCGGCCTGGGTGGCAGCGTTTGCGGCCCCGGCGCcggtggtgttggtggtggtggtgNNAGAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCATCAACGACCTTATGGCAGCGTGCTCATCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGCGGCACCAAATCGTGGAACGAGGATGCCTTACAGAATGCCTTGGAGGCGTTGCGTTCGGGTCAAATATCGGCAAATAAAGCATCCAAAGCGTTTGGTATACCCTCATCGACGCTCTACAAGATTGCGCGTCGCGAGGGCATACGGCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACACCCGAGGATTTGGAGCGTGCATTGGAGGCGATACGCGCCGGCAATACGTCTGTACAAAAAGCAAGTGCCGAATTTGGCATACCGACAGGAACACTTTATGGACGCTGCAAACGGGAGGGCATCGAACTGTCGCGTTCGAATCCAACACCTTGGTCCGAGGATGCCATGAACGAGGCATTGAACTCAGTGCGCGTCGGTCAAATGTCCATCAATCAGGCGGCCATACACTACAACCTGCCCTACAGCTCGCTCTACGGACGCTTCAAGCGTGGCAAATACGATGTCGTGGCCAATACCAGTGGCATCTCCCTCAACAATACATCGGGCAACACGACCGGCAGCATTGAGATTATCGAGCATAGTCAGGAGAATTCGcaacagttcCCGTACAGTCCGTCGCCGCATCCGCCGACGCCGCAGCACCACGGCACGCCGCAGCACCACAGCGCGCCGCAGCATCATAGCACGCCGATGCATCATAGTACGCCGCAGCATCACAGTTCGCAGCAGGGTCCGCCGACGCCGCAGGGCATGCAACAGCACGTGCATCACGGCACGCCCGAGCGTAGTTGA
- Protein Sequence
- MRLGLSAALRLGLLRTAEQLKIKGLCEPAENADDLNDAASATITVSENIQQAVVGNIGQNQTSIVSLQQTADGNYIPVATAGDDSDSDNKPQKICKTEQSVASPASNSSTSNNAAGVSGQAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQHIHRLDQSPMHSISHHHATGDESNSNLAQHIKSEVIEAKHLQQQQAAVHAAQHAALATHAEIGGATVMEIDPSQIKHEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGGSVCGPGAGGVGGGGXRKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGISLNNTSGNTTGSIEIIEHSQENSQQFPYSPSPHPPTPQHHGTPQHHSAPQHHSTPMHHSTPQHHSSQQGPPTPQGMQQHVHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -