Dmon016143.1
Basic Information
- Insect
- Drosophila monieri
- Gene Symbol
- -
- Assembly
- GCA_035047585.1
- Location
- JAWNPJ010000114.1:373342-376378[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.071 5.7 7.7 0.0 1 19 365 383 365 386 0.80 2 8 0.00063 0.05 14.2 0.6 1 23 679 702 679 702 0.97 3 8 4.6e-05 0.0036 17.8 1.2 2 23 737 758 737 758 0.97 4 8 1.7e-05 0.0013 19.1 2.1 1 23 764 786 764 786 0.96 5 8 3.4e-05 0.0027 18.2 0.9 1 23 792 814 792 814 0.98 6 8 0.00058 0.046 14.3 1.5 1 23 820 842 820 842 0.97 7 8 0.01 0.8 10.4 0.0 2 23 849 870 848 870 0.96 8 8 0.0014 0.11 13.1 0.1 3 22 878 897 876 897 0.95
Sequence Information
- Coding Sequence
- ATGCGTCAGCTGTGCGGCAGCGTCTATACCTGGAACTGTGCCGGGGAACTGTACGCCATCGAGTGCTCCTTGTGCGAGGAGCGTCCGCTGTGCGCCCTCTCCGAGTTCCCGGAGCACATGGACGTCTGGCACTCGGACTGGCAGGCCCCCGATGAAAATCCCACTCCTGCCGCACCTAACTCCCCAGCTCCCCAGCCCGAAGATGAGCTCATGCAAGAGGTCCTCGCCGAGCAGGGCATCAACGGCGAGGACAACGAGCTGAAGCAGCAGCTGGTCCTCGAGCTGAACTCCAGCGAGGAGGAGCTGTTCTCCGACGACGAGGAGCTGATCGAGGAGCTGCAAATAGCAGAGGAGAGGCCATCCCAGGGAGAGTCCCCAGAAAACGTACCAGATTCCACCACCAATCTGGAGGAGCCATCATCCCCAGTGCCGGAGGGCCAACGCCTCACCACCCAGCACGTCCACCGCCTCATCGAGCTGTACCGGTCGGAGCCCCGGCTCTGGAACCAGACCCACGCCCAGTTCCGGGACATGGAGCTGTGCCGGGAGTCCTGGCGCCGCATCACCGAGTCCTGGAGTGCCTACTGCGGCCGGAGCTTCAGTGTGACGGACGTCCGGATCCGAGTGTCCACCCTGTGCCAGCGATTCCTCAAGCAGCGGGAGCGCCTCGAGGCGGACGGTGGAGAGCTGGATGATGCGGCCAAGTTCGTCCACTTCGACCAGCTGAGCTTCCTGTGTGAGCAGCAGTCCCTGCTAAACCGGCAGAGGCACTACGTCCGGGAGAACCGCCGCCTGCTGGAGCTGTACGAGCACTATCCGGTGCTCTGGCACAACGCCCACAAGAGGATCCGGTGTCCGGAGACGGTGAAGCGTCGCCACGAGGCCCTCCGCGGCCTTCAACTGGCCCTGCGGCTGTCCGGCATCATTCTGTCCCCGGTGATCATCCAGAGGAGGCTGCAGTCCCTGAGGAAGCGCTATCGCCTGGAGAAGATCAGCTATCTGCACAGCGTGGTGGCCGGGAAGCAGGCGGAATTCGTATCCGGATTCGAGCATTACGGGGAGATGGAGTTCCTCAACAAGCACATCGATCCCTATGTGTGCGCCGTGTGTGGGAAGATCTTCGAGAACCTGGCAGGCCATCAGGCCCACGTCCAAAGCAGCTGTGAGCAGGATGCCAAGACGGCGGAGGACACTCCTCCTCAGGAGGTCAAGGATCCCATCTCTCCAGACAAGAAGGACGCTGAGCCGGAAAAAGTGGAGCCGGCAGAGGATCTACCCTCTCTGGAGGAGGCTTGTGCCGCAGTCTCCAGTGAGCTGGACACTTCCCTGGGAGGAAGGTCCTCCTTGGGGGAAGAGGACGCCACTTCCGAAGCCACCCGCCTTCGGATGAGCCCCGAAGACACCCAGATCCTGATCCAACTCTATCGAAGTCAAGTGTGCCTGTGGGATCCCAACCACCTGGACTACCACGCCCGGAAGCAGCGTCGCCTCGCCTGGCAGAAGATCACCGAGGATCTGAACTCAAAAACGGGACAGACCCTGAACTGGCAGCAGGTCCACCGCAAGATCATGGACTACACCAAGTACTACAAGAAGGAGAGGACCAGGAGCCAGGAGGAGCCAAAGGAAGGTGAACCGCCCAAGGAGCCGTGGAACCTGTACGAGCAGTTCCGCTTCCTGGACGATGTCCTGCCCATCAGCAGTGAGCTCCACAAGACCACGAATCAGAGGGAGAGCAACCTGAAGATCATCTCGGTGTATCAGAGCTACTCCCAGCTGTGGTGCACGGATCATCCGGACTACACCAAGCGCAGGCAGCGCCAGAGGCAGTTGGAGTCGCTGTGCAACCGGCTGCAGGAGGAGTGCAACATCCAGATGACAGTGGAGCGGCTGAAGAGTCGCCTGATTGACTTCCGGTGTCAGTATCGTCACTGCAAGGAAGCCCGGATGGAGGCCCTGAAGAAATCCGAGGACTGGACGTCCACCTACGAGTTCTACGAGCCGTTGCGCTTCCTGGAGCTGCATGTGGCACCGTTCCAGTGCCCCCGGTGTCCGGCGAACTTCAAGAGGCGCACCGACTTTCTGCTGCACGAGCGGAACGTGCACGCGGACGTGGAGCGCAGCCTGGACGGGGAGTTCCGCTACGTGAAGCAACGCCGCGGCAAGAAGTTCAAagaggaccaggaccaggacctgGACCTAACCAATGTCTGCCACATTTGCGGCCTCAAGTTCACCCTTCGCACCAGTCTGGTGGCCCATCTGAGGCGCCACCTGGGCCAGAGGAGTCACGCCTGCGGCGAGTGCCCGAAGAAGTTCTTCAACTCCACGTCCCTGCGCGTCCACCAGCGCAGCCACACCAAGGAGCTGCCCTACGTCTGCGAGCACTGTGCCCGGGGCTTCGTGAATGCCAGCAAGCTGAACCAGCACGTGAAGCGGCACCGGAACCAGCGGGACTTCCCCTGCAACCGATGCGACAAGGCCTTCTACACGGCCCACGAACGGGATCGGCACCTGCGCGCCCACCTGAACATCCGGGACAAGGTGTGCCCGTACTGCTCCCGGGCCTTTGTGGTGGGCAGTGCCTACTACGCCCACCTCAATCTCCACCGGAGCGAGAAGCGCTACGGCTGCCCCGCCTGCGGCAAGCGGTTCGCCCAGTACGCCGGATTGTACAAGCACCGAAGGCGCTGCCTGCCCGCCGAGGTCATCGAGGAGTAA
- Protein Sequence
- MRQLCGSVYTWNCAGELYAIECSLCEERPLCALSEFPEHMDVWHSDWQAPDENPTPAAPNSPAPQPEDELMQEVLAEQGINGEDNELKQQLVLELNSSEEELFSDDEELIEELQIAEERPSQGESPENVPDSTTNLEEPSSPVPEGQRLTTQHVHRLIELYRSEPRLWNQTHAQFRDMELCRESWRRITESWSAYCGRSFSVTDVRIRVSTLCQRFLKQRERLEADGGELDDAAKFVHFDQLSFLCEQQSLLNRQRHYVRENRRLLELYEHYPVLWHNAHKRIRCPETVKRRHEALRGLQLALRLSGIILSPVIIQRRLQSLRKRYRLEKISYLHSVVAGKQAEFVSGFEHYGEMEFLNKHIDPYVCAVCGKIFENLAGHQAHVQSSCEQDAKTAEDTPPQEVKDPISPDKKDAEPEKVEPAEDLPSLEEACAAVSSELDTSLGGRSSLGEEDATSEATRLRMSPEDTQILIQLYRSQVCLWDPNHLDYHARKQRRLAWQKITEDLNSKTGQTLNWQQVHRKIMDYTKYYKKERTRSQEEPKEGEPPKEPWNLYEQFRFLDDVLPISSELHKTTNQRESNLKIISVYQSYSQLWCTDHPDYTKRRQRQRQLESLCNRLQEECNIQMTVERLKSRLIDFRCQYRHCKEARMEALKKSEDWTSTYEFYEPLRFLELHVAPFQCPRCPANFKRRTDFLLHERNVHADVERSLDGEFRYVKQRRGKKFKEDQDQDLDLTNVCHICGLKFTLRTSLVAHLRRHLGQRSHACGECPKKFFNSTSLRVHQRSHTKELPYVCEHCARGFVNASKLNQHVKRHRNQRDFPCNRCDKAFYTAHERDRHLRAHLNIRDKVCPYCSRAFVVGSAYYAHLNLHRSEKRYGCPACGKRFAQYAGLYKHRRRCLPAEVIEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00615717;
- 90% Identity
- iTF_00504193;
- 80% Identity
- -