Basic Information

Insect: Drosophila mojavensis
Gene Symbol: sob
Assembly: GCA_018153725.1
Location: JAECYD010000036.1:18220162-18224103[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 2e-05 0.0015 18.9 2.6 1 23 459 481 459 481 0.98

2 5 1.6e-07 1.2e-05 25.4 1.8 1 23 487 509 487 509 0.97

3 5 3.5e-05 0.0027 18.1 1.1 1 23 515 537 515 537 0.96

4 5 1.1e-07 8.4e-06 26.0 3.3 1 23 543 565 543 565 0.98

5 5 1.8e-05 0.0014 19.0 3.0 1 23 571 593 571 593 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	2e-05	0.0015	18.9	2.6	1	23	459	481	459	481	0.98
2	5	1.6e-07	1.2e-05	25.4	1.8	1	23	487	509	487	509	0.97
3	5	3.5e-05	0.0027	18.1	1.1	1	23	515	537	515	537	0.96
4	5	1.1e-07	8.4e-06	26.0	3.3	1	23	543	565	543	565	0.98
5	5	1.8e-05	0.0014	19.0	3.0	1	23	571	593	571	593	0.97

Sequence Information

Coding Sequence: ATGGATGCAGCGAAGCAATTGACTGCCGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATGCGTTGTCCTTTGAGGCTGGCGATCTGGACAGCAGCTACGGCAGCTTCATCTTCAATCCCAGCAGCTTTGGGGCCGCCGATGCGGATACTTCGCTACACTCGCTGCAGGCCACCATGTACCAGGACAAGCTGAGCGTCATGGCGGCCGGCGCCGGCAGCGGTGCAGAGGATGGGGCCAACAGCTCCACGGCTGCCGCGGCTGCTGCCCAGCGCTCGAAGAAGCAATTCATCTGCAAGTTCTGCAATCGCCAGTTCACCAAGTCCTACAATCTGCTCATCCACGAACGCACCCACACGGACGAGCGTCCCTACTCCTGTGACATATGCGGCAAAGCATTTAGGCGTCAGGATCATCTGAGAGATCATAGGTACATTCACTCCAAGGAGAAGCCCTTCAAGTGCGCCGAGTGCGGCAAAGGCTTTTGCCAGTCGCGCACCCTGGCCGTGCACAAGATTCTGCACATGGAGGAGTCGCCGCACAAGTGTCCCGTGTGCAATCGCTCCTTCAATCAGCGCTCGAATCTGAAGACCCATCTACTCACCCACACGGACATCAAGCCCTACAATTGCGCCTCCTGCGGCAAGGTGTTTCGGCGCAACTGTGATCTGCGGCGCCACAGTTTGACGCATAATCTGTCGGCCACGGGCGGAATGTCCGGAGGCCTGGGCGATCTATTCGGCGGCAGCAGCAACGGCTCCAGCTCCGATCTGGGCCTATCGATGGTACTGCCCAATTCAACTGGCGCCGGATCAGCTGGCTCAGCCACAAGCCGAGACCTTGTGGCCGTCAGCGATTAG
Protein Sequence: MDAAKQLTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDALSFEAGDLDSSYGSFIFNPSSFGAADADTSLHSLQATMYQDKLSVMAAGAGSGAEDGANSSTAAAAAAQRSKKQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHRYIHSKEKPFKCAECGKGFCQSRTLAVHKILHMEESPHKCPVCNRSFNQRSNLKTHLLTHTDIKPYNCASCGKVFRRNCDLRRHSLTHNLSATGGMSGGLGDLFGGSSNGSSSDLGLSMVLPNSTGAGSAGSATSRDLVAVSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -