Dmoj004897.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila mojavensis
Gene Symbol
-
Assembly
GCA_018153725.1
Location
JAECYD010000229.1:4819657-4821882[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.00026 0.02 15.4 5.0 2 23 153 174 152 174 0.98
2 9 5.7e-07 4.4e-05 23.7 3.1 1 23 180 202 180 202 0.99
3 9 3.7e-07 2.9e-05 24.3 1.0 1 23 208 230 208 230 0.99
4 9 1.1e-05 0.00084 19.7 3.3 1 23 298 320 298 320 0.99
5 9 9.6e-07 7.5e-05 23.0 0.9 1 23 326 348 326 348 0.98
6 9 8.9e-07 6.9e-05 23.1 5.8 1 23 354 376 354 376 0.99
7 9 1e-05 0.00078 19.8 1.2 3 23 488 508 486 508 0.98
8 9 1.6e-06 0.00012 22.3 0.5 1 23 514 536 514 536 0.99
9 9 1.1e-07 8.5e-06 26.0 2.2 1 23 542 564 542 564 0.98

Sequence Information

Coding Sequence
ATGCATTTGAATCATGCGACGGCCGCGACAGCTGCTATGGCCAACTATCAGCACTATGCGCCAGCACAGCTTGCCACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAATAGCTTACAGCAGCCAACGACTATTGCGAGCCTGCAGCAGAGCCCGTTTGCTTTGCATCAATTGACTGCCGTGCAGGCCATACAGCATCCCACCCATCAAGCCATGCTTCATCCACAGCATCCGCTTGTGCACCTGCTCGACATCTCGACGACCACAACGAACAGCGGTGGCAATCATACGCCCATATCGCCCATGAAACAGGAGGTGCAGAGCGTCATTAGCGAGGATGAGTCTGTGGTGGACGATCCGCGCAAGAAGAAGCAGTGCCACGTGTGCAAAAACAAGTTCCGGCAGTTGACCACGTTACGCAATCATATGAAAATACACACAGACGAACGTCCCTACAAGTGCAAGCACTGCGACAAGGCCTTCCGCCAAATCTCGACGCTGACCAATCATGTGAAGATCCACACTGGTGAAAAACCATTCACGTGCAATATTTGCGCCAAGGACTTTCGCCAGCAGAGCACGCTCATAAATCACATTAAGACGCATAAGGCGGCTGAGTCAAGCACGCCGACGTCGCTACTCAACTATCAGCCGCCGTCCTCTTCCGGCAAGCACAGCCGTAAATCGCAGTCGAATCAGATGCACAACGCCTACCAGCAGCAGCATCAGCAGCAGCGTGTACAAATCTCAAAGACTCTATATTCGGGCACCTACAGTTCGCCACAGGCGGAGGAGCTGGTGAAACCGTATCAGTGTAGTGTGTGCAAGCGACGTTTCCCGCAGCTGAGCACGCTGCACAATCACGAGCGGACGCACATCGATCCTAAGCCGTACAAGTGTGAGACTTGCGACAAGTCCTTCAGCCAGCTAGCGACATTGGCCAATCACAAAAAGATACACACCGGCGACAAGCCATACACGTGTTCCTATTGCCACATGCAGTTCCGGCAGCAGAGCACGCTCACCAACCACATGAAGACGCACACACATCTAACCAGCCAGCCAGCCACAGTCACAGCCACAGTGGATCACTCAACCATGCCAGCGCCCCTTGTTCCCGGCACGCAGCAGCTAACGAGCGGCTTGCTACCCAACAACCTGCACAGCACAACGCCCAACATCCTTCAACTGGACCATCATCCGCTGCTACACTTCCTCGATGGCAGCACTACGGTGAGCTCTGTGGTGGCCAGCAATGTAGCAGCGGCGGCGGCGGCCAACACCAAAGTCGAGCACTATCAGAATGCGCAGGGCGTTCGACTAAATGTGGGCAACATCAATATGCTGAAGGGTGACAATCCGGATCGTCCGTTTGGCTGTAGCGTCTGCCGGCGGTTCTTCTCGCAGCAGAGCACTCTGGTCAACCACATCAAAACGCACACGGGCGAGAAGCCGTACAAGTGCAAGATCTGTGAGGTTAGCTTCCGGCAAGTGGCCACGCTCAATAACCACATGAAGATCCACACCGGAGAGAAGCCCTACAACTGTTCCTACTGTCCCAAGCAGTTCCGGCAAAAGAGCACACTACAAAACCATTTGCGGGTCCACACGTGCTAG
Protein Sequence
MHLNHATAATAAMANYQHYAPAQLATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNSLQQPTTIASLQQSPFALHQLTAVQAIQHPTHQAMLHPQHPLVHLLDISTTTTNSGGNHTPISPMKQEVQSVISEDESVVDDPRKKKQCHVCKNKFRQLTTLRNHMKIHTDERPYKCKHCDKAFRQISTLTNHVKIHTGEKPFTCNICAKDFRQQSTLINHIKTHKAAESSTPTSLLNYQPPSSSGKHSRKSQSNQMHNAYQQQHQQQRVQISKTLYSGTYSSPQAEELVKPYQCSVCKRRFPQLSTLHNHERTHIDPKPYKCETCDKSFSQLATLANHKKIHTGDKPYTCSYCHMQFRQQSTLTNHMKTHTHLTSQPATVTATVDHSTMPAPLVPGTQQLTSGLLPNNLHSTTPNILQLDHHPLLHFLDGSTTVSSVVASNVAAAAAANTKVEHYQNAQGVRLNVGNINMLKGDNPDRPFGCSVCRRFFSQQSTLVNHIKTHTGEKPYKCKICEVSFRQVATLNNHMKIHTGEKPYNCSYCPKQFRQKSTLQNHLRVHTC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00901644;
90% Identity
iTF_00559629;
80% Identity
-