Dmim000228.1
Basic Information
- Insect
- Drosophila mimica
- Gene Symbol
- -
- Assembly
- GCA_037043585.1
- Location
- JBAMBE010000051.1:579256-581673[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00078 0.051 14.0 2.9 3 23 261 281 260 281 0.98 2 12 0.00037 0.024 15.0 0.5 1 23 287 312 287 312 0.94 3 12 0.00047 0.03 14.7 0.6 1 23 319 344 319 344 0.93 4 12 0.0027 0.17 12.3 4.5 1 23 353 375 353 375 0.96 5 12 4.1e-06 0.00027 21.2 1.2 2 23 382 403 381 403 0.96 6 12 0.0075 0.48 10.9 0.5 1 23 409 431 409 431 0.97 7 12 0.032 2.1 8.9 1.4 1 23 437 460 437 460 0.97 8 12 0.01 0.66 10.5 3.9 1 23 466 488 466 488 0.96 9 12 0.00014 0.009 16.4 0.7 2 23 495 516 494 516 0.98 10 12 0.00019 0.012 15.9 0.8 1 23 606 629 606 629 0.95 11 12 0.23 15 6.2 0.6 1 23 635 657 635 657 0.89 12 12 7.7e-06 0.0005 20.3 3.2 1 23 663 686 663 686 0.98
Sequence Information
- Coding Sequence
- ATGAATGAGGGGAGTGAATACTCCATTCACTCAATATGCCGAATCTGCTTAAATCACCTTCGAAATGATCCGGCTTACGACCTGTTTCTCGTTCCCGGTCTGGCCAaaaaactgtgtgtgtgtacttcaCTCTCAGTGGAACAGAACGATGGCTTCCCGAAAAACCTTTGCACAAACTGCTACACCAAGCTGAACGACTTGCACGGATTCCAGAAGCTGTGCGTGGACTCTGTGCAAAAGTTTCAGGAAATGGTCGCTAGCAATTACTTCGTTCCCATTGCTGGTGATATTGACAAAGTCGATTTGCTGACTGGTGCGCCGATCGATGGCGAAGCGGATGACGATAACATCAACTTTGATCCGCTTCTGAACTCCAAGCTAGAAATTGTGGAAACTGAGGAGgatgtttttaaaatgctaGATGATGTCGACAAGGAAGCAGAGGAGGTTGAGAAGGAAGTAGAGAGGGAGGTAGAAAGGGCGAAGGATGTATCCAGCGACACTGACAACGACAATGACAATGATATTGACGACGATAGAGACGTTGACTTTCAAGTGAATAGTAGCGACTCTGACGACGCCGTACCCTTGTCCCGCTTACGTAGTTCGACCAGGGCTTCAACGACAAAGGCCAAAACGAATACTGCGGATGACGATGAAAATGATTCCTCTAGCTTTGAATGGGCTGATGATAAAAAGGACGACATGGATGAACCCAAGCCAAAGGCAAGGCGAAAACGCCCTCAAGCTGCTGTGGCACCCCTCGATGGACTGGTTGACTGTCACATTTGTcaggaaaaatttaaaagcaccAAACTGTACGAGGAACACATGAAAAGTCACAACGATGTATTGCCATTCCAGTGCTCAGTTGAAGGCTGCAAGAAGGGTTTCACCACGCCTGGTCGTCTCCGCCTTCATATGGACCACGCCCATTCAGAATTCTCTGAAGTACACGCCTGCACTGCTGAGGGATGTGACAGGACCTTTCCTCGATCTGGCTCGCTCACTTTTCATATGAGAAAGGCGCACAACATTATCAAAACACCTCGAAGTCATGCGTGCACGGAATGCGACAAAGTCTACAGTTGTTCAACGGCACTCAAGAAGCACATGTATAAGCACACTGGTGAGAAGCCAATCTCCTGTAACATCTGTAGCAAACGTTTTTACAGAAACAGCGATCTCAAAGATCATCTTTTGCGCCATGCCGGCGTGAAGAACCATGTGTGTCCATATTGCGGAGTGGGCAAAACTACTCGCCAGGAATGGAACAAACATATATTGACTCACACCAAGGAGAAACAGTTCCAGTGTCTCCAGTGCGACCATGCCTCTCATAACAAACAGGCTCTGGCCAATCATGTCAAGGTGGTTCATATGAAGATTAAGGACTACGCGTGTCAGTATTGCGATAAAAAATTTAGCATGTCGTATTCGTGCAAGATTCACGAGAGACTTCACTCGGGCGAGAACTGCAGCAAGTGTTTGATCTGTGGCAAGGTGTTCCTTTCGGAGAAGGGATTGACCAAACACTTAAAAACCCATGAGAAGCGCGATAAAACACGGTCTGCTTCTGCGACAGCAGTCAAACCAAAGGACGATGGAGGCGAACAAGGCACACAAGACGCTATCCAAGAATTGATTCCGCTAGTGGACGGGAAAGTCGTTCCAAAAGTTTCCACCAAGCCGAAGTCAAATAGAGTTGAGCGTGTGGATATATCTCAGCTAGCAGGCACCTCTGTCAATCCAATATCGTCGGTATCGGTGCCGTCCTGGGCGCCACAAGTTAACTTCACAAAGAAGGAAGGTCAGCATATTTGTCCAGGATGTGGACGTGGCTTCAATCACATTGGAAACATGAAGCTTCACTACAAGATAATACACGAGAAGGTGAAGGACTTTGCCTGTCGCTTTTGTCCGAAGCGTTTTGCGAAGGcagaaattttgaaatatcaTGAATTTGTTCACACTGGCGAGAAGCCGTACGAGTGCAAGGTATGCGGCAGACACTTCCGGCAGTATTCAGGTATGAAAAACCATTTGAGAAGATTGCACGAGAATGCGAAACCTGCAAAGGAGCCGAAACCAAAAAAGACTGTTACTAGGCCAACTGGACCACACGTATtgctcaacaaaaaacacgtCCTAAAGAATTTTGATGAGTACCAGGATCCTGCTGCAGAGCAAGCCGCTGCGACTGCGGCATTGCTTGCCCAACAGCAGGAGGAGAATGAGGCGAAGCGAAGGGCTGAAGAAGAAACTCGCAAGATTCAGGAGAATGCATGTAAGCAACTTCAGAAGTTGCAAAAGGAGCAACTTATCGATAAGATATCCATTAACAGTTTTCAAGTAAAAAGATCCGAATCCGGTGTCACTGTGGATGATCTCAAAGTTGATTCTaggcgaaaaaaataa
- Protein Sequence
- MNEGSEYSIHSICRICLNHLRNDPAYDLFLVPGLAKKLCVCTSLSVEQNDGFPKNLCTNCYTKLNDLHGFQKLCVDSVQKFQEMVASNYFVPIAGDIDKVDLLTGAPIDGEADDDNINFDPLLNSKLEIVETEEDVFKMLDDVDKEAEEVEKEVEREVERAKDVSSDTDNDNDNDIDDDRDVDFQVNSSDSDDAVPLSRLRSSTRASTTKAKTNTADDDENDSSSFEWADDKKDDMDEPKPKARRKRPQAAVAPLDGLVDCHICQEKFKSTKLYEEHMKSHNDVLPFQCSVEGCKKGFTTPGRLRLHMDHAHSEFSEVHACTAEGCDRTFPRSGSLTFHMRKAHNIIKTPRSHACTECDKVYSCSTALKKHMYKHTGEKPISCNICSKRFYRNSDLKDHLLRHAGVKNHVCPYCGVGKTTRQEWNKHILTHTKEKQFQCLQCDHASHNKQALANHVKVVHMKIKDYACQYCDKKFSMSYSCKIHERLHSGENCSKCLICGKVFLSEKGLTKHLKTHEKRDKTRSASATAVKPKDDGGEQGTQDAIQELIPLVDGKVVPKVSTKPKSNRVERVDISQLAGTSVNPISSVSVPSWAPQVNFTKKEGQHICPGCGRGFNHIGNMKLHYKIIHEKVKDFACRFCPKRFAKAEILKYHEFVHTGEKPYECKVCGRHFRQYSGMKNHLRRLHENAKPAKEPKPKKTVTRPTGPHVLLNKKHVLKNFDEYQDPAAEQAAATAALLAQQQEENEAKRRAEEETRKIQENACKQLQKLQKEQLIDKISINSFQVKRSESGVTVDDLKVDSRRKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00498311;
- 90% Identity
- iTF_00525313;
- 80% Identity
- -