Basic Information

Insect: Drosophila mimica
Gene Symbol: salm
Assembly: GCA_037043585.1
Location: JBAMBE010000578.1:3769497-3777299[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2.4e-06 0.00016 21.9 1.7 1 23 365 387 365 387 0.98

2 8 3.4e-05 0.0022 18.3 3.5 1 23 393 415 393 415 0.98

3 8 2.3 1.5e+02 3.1 2.5 5 23 652 670 649 670 0.84

4 8 3.5e-08 2.3e-06 27.7 0.2 1 23 676 698 676 698 0.98

5 8 0.0011 0.069 13.6 0.9 1 23 708 730 708 730 0.98

6 8 0.053 3.5 8.2 0.1 2 23 937 959 937 959 0.96

7 8 1.2e-05 0.00075 19.8 5.0 1 23 1106 1128 1106 1128 0.96

8 8 9.2e-08 6e-06 26.4 0.7 1 23 1134 1156 1134 1156 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2.4e-06	0.00016	21.9	1.7	1	23	365	387	365	387	0.98
2	8	3.4e-05	0.0022	18.3	3.5	1	23	393	415	393	415	0.98
3	8	2.3	1.5e+02	3.1	2.5	5	23	652	670	649	670	0.84
4	8	3.5e-08	2.3e-06	27.7	0.2	1	23	676	698	676	698	0.98
5	8	0.0011	0.069	13.6	0.9	1	23	708	730	708	730	0.98
6	8	0.053	3.5	8.2	0.1	2	23	937	959	937	959	0.96
7	8	1.2e-05	0.00075	19.8	5.0	1	23	1106	1128	1106	1128	0.96
8	8	9.2e-08	6e-06	26.4	0.7	1	23	1134	1156	1134	1156	0.98

Sequence Information

Coding Sequence: ATGTGTTCCATATTTCGCAATCGCATCAATTATCGGGGCACAGGAACGCGCAGTGGCGCCTCCAATGGAGGTGGAGGCGGAGGCGCAGGCggggtcagcagcagcagcagcagctcagatCCCACCGGCGAACGGGAGAGTCTCCTGGCCAAGGAACTGAATGCggacagcaataacaatgcggCGGATGAGACAATCGAGCCGGAATTGGAGatggagctgcagctggaaaaggagaaggagaagcagTCGGAGACTTCACTGCCCAGCTCCGATCAGCCAGAGAACAGCAATGAGGCACTGGATCTGTCGGTCATCTCGGGCAATCGGTTGCCCAGCAGCGGGCATGTGGCACTAGAAGCTTTACAACATACCAAAGTGGCGGTGGCTCAGTTTGCGGCCACTGCGCTGGCGGCGGCATCCACGGATCCCAGCGATCTGGCCATGGTCCAGTCGACCATCTTCAATGTGCAGCGACAGCATctgatgcagctgcagctcatcCAGCATCTACAGAGTCAATTGAAGCGGGCGGGGGGCGTGGTCGCCGCCCTCAGCCGGCAGTCGGGTCAAAACTATGCCGAGCAGGACGAAGATGAAGCGGCAGAGGAGGCAGAAGACGTGGAAGAGTTGGACGAGGAGCAGCAACTATCGATGCCATCCAAAGAAACGTCGCGGGTGAACGGACAGCGAACCGAATTGGATCATGCAAGGCTGGAGGAGAGTTCAAAGACTGATGAAGAGTGCAATAGGCTGGCGGAGAGACCAAGGCGGGAAAGATCGCTGGAGACGACAAAGACGCAGGCGGAGGCAGATGCTGAGGCGGAGGCTGAAGCCGAAGGCGAACAGGAGTTGGCCGAGAGCGAGTACAAGCCACTGATGTGCGACATCAGCTCCAGTCTGGCGGCCAGCATCATTACCAATCACGATCCGCCGCCGGCGCCCAACGAGCCCAACTGCCTCGAGATGTTGCAGCGTCGCACCGAGGAGGTGCTGGACTCAGCGTCGCAAAGCCTGCACGCCGCCCAGATGCAGGAGGAGTACTCGGAATATGCCTCCAAGGAGGCGCAGAGTCGCGGCGAGATCTTCAAGCATCGCTGCAAATATTGTGGCAAAATCTTTGGCAGCTATTCCGCTCTGCAAATCCACTTGCGTTCGCACACCGGCGAGCGACCCTTCCACTGCAACGTTTGCGGCAGCAAGTTCACCACCAAGGGCAATCTCAAGGTGCACTATCAGCGGCACACGCAGATCTTTCCGCCCATGCTGATGCCACCAGTGGTCAACGGGGTCAACGCACCCGAGCAATTTGCGGCAATTCGGCTGCCGTTTGTGGcacccacagcagcagcaccactgGCAGCACccctgccaccaccaccaccaccacctccacccCCGCCGCCAAGTAAcgagcagctggaggagcCGGAAGCTCTGGGCCGGCTGCAGCAGGCCGAGGATCTGAGCAAGCCGCTAGCGAGGGAACTGTCGCAGTCGCCCGAGCAAGTCACGCAAACCAAGTCGCTTAGCGAAGCAACCGCGCTGGTGTCGCCCGAGAAACAGGACAAGGACCAGGTCAAGGACAGTCCCAAGCCAACGACACCGCCAACGCCACCAGCTCCCTCGCCAACAACTCCAACGCCGGCAACCAGCAATCGTCGCAATGGCAGTGTTCGCAAGCGACAGACCAGCCAGGCGGGAAGTCCGCCTGGCGAGGAGCATCCGCACGCAGAGCATCACTCGCACCTGGTCAAGTTGGTGCGTCGCTCCTCGGCGAGCCGGGATGGGATGACAGCGATGCCCGCCGAGTATTCATTGGCGCAGATGGAGCGCATTATTGACAAGTCGTGGGAGGATCTCATTGAGATCGACAAGACGTCGGAGACAtcgaagctgcagcagctggtcGATAACATTGAGAACAAGCTGACCGATCCCAATCAGTGCATCTTCTGCCAGAAGGTGATGTCCTGTCGCAGCTCCTTGCAGATGCACATACGCACCCATACCGGGGAGCGACCCTTTCGCTGCAAGATCTGCGGACGCGCCTTTGCCACCAAGGGCAACCTGAAGGCGCACATGAGCATCCACAAAATCAAGCCCCCGATGCGCAGCCAGTTCAAGTGTCCGGTCTGCCATCAGAAGTTCTCCAACGGCATCATACTGCAGCAGCACATACGCATCCATACCATGGACGATGGCAGCGCTGGCCATgctcagctgcagcagctgcagggGCAGGTCGGCGATGTGGAACGATTGGGCATCGAGGATCAGAACTCGAACAAGTCGCTGGGCACCTCAGACACGCTGGACTTCTCGACGACCGTCTCGGATCATTCGGGTCAGCGATCGGAGTCGTCGCAGGGTGGCGACTTCGATGAGTTCATGACCATGGACAGCACCGATGATTCCCGTGACAATTCCTGCGCAGTGCTCGACAGGGAGCGAGATCGGGATGAGCGCTCCCGTTCGGACGATGTGGAGGGCAGCGGACGTGAGAGTGCCAGCGGTGAGATGCCCGCCATGGATCtgtcatcgccatcgccatcggcCACATCGCTGGCGCGCCTCTTTGGAGGCAACAGCGGTGcaggagtcggagtcggagttggagctgctgctactgctgctgctgccagttcaGGCGGTTTGCCCATGTTGCATGGCATGCCGATGCCACCGaatctgctgctgatggccGCGGCCAGGGAGGAGATGCATGCGCTGGGCCAGACGCATGCCAAGTTTCCGCTGCTGCCCTTCGGACCGCTCGGATTAATGGGACTGCAGCCGCCCCCAAATGTGTGCAATCTGTGCTTCAAGATGCTGCCCAGCCTGGCCGCCCTCGAGAGCCATCTGCAGAGCGAACATGCCAAAGAAGTGACGGCTCCTTCCGTTCGAGCCCACTGCAACGATGCGTTATCACCCTACGGGGCAAAGCTCACTCTCAATCCAAATCTGTTTGCCAAGAAGCCGAAGCCGGCCTCAGCGCTGGAGATGGCGCCTGCGGACCCAGTCACGCCATTGTCGGCAACCATTAAAGAGGAGCCCGAATCCGAtcagccgcagcagctgcagctgcccgAAGAGGGTGGCTGCGATAGTGGCACCAGTAGTGGCACTTCTGCAGCTGCCCCAGCCACGGCTGCCACTGGCTATCAGCATGAGTCTGCCGCCGATGCGGAGCAGTCCCTAATGAAGATGCAGTTGCATGCACATCGTTTTCCAGCCGGTCCGCTGGACTTTCAGCAGGCTCTGATGTCGGCGGGGCCGCCCAGCTCCAGCCTGGATCCGCCGGTGAATAACAAGCACTTCTGTCACGTCTGTCGCCGCAATTTCAGCTCCAGTTCGGCACTGCAGATTCACATGCGAACCCACACCGGAGATAAGCCCTTTCAGTGCAATGTGTGTCAGAAGGCCTTCACCACGAAGGGTAACCTTAAGGTTCACATGGGCACCCATATGTGGACGAATCCGACGTCGCGTCGCGGCCGTCGCATGTCCCTGGAGCTGCCGATGCGACCCGGTCCCGGCCCGGGCCCAGGTGCCCCACATGGTGTACCAACCGCTGAGCAGGAGTTCATGCAGCGACGCCCAGAGCTCTTCTTCCCATATTTGCCACCCTTCTTCAACGGAATGCCACCAAAGCCCGGCGAATTGAGTCCTGGCGCTTTTGCCAACATACCTCCACCGCATTTTGCAAATGGAGCCAAGTATCCATATCCACCCGGTCTGCTCGGCTTTCCCGGCTTTCtgggtgctgctggtggccaTCACCAGCATCCCTATGGCGGAGTGGAGCGGGGCAACAGCAAGTCACCCACTTCGGAGCCGGCACAGAGTCCTGCTTCTCGTGAGGATGACTCGGGTCTCAGTAACAACATCTGGCATCCGCTGAGCAGCATTAAGATGGAGAGCAATCATAACGAGAGCGCTGGCAATCAGAgcgagcaggagcaggaagcggaacaggagcaggatcAGGAGGATTGTAAGAGCGTAGGCATCGATGCGGATGGCGAGCCTGAGGCGGATGCTGAGGATTCAGCTGAGAAGTAG
Protein Sequence: MCSIFRNRINYRGTGTRSGASNGGGGGGAGGVSSSSSSSDPTGERESLLAKELNADSNNNAADETIEPELEMELQLEKEKEKQSETSLPSSDQPENSNEALDLSVISGNRLPSSGHVALEALQHTKVAVAQFAATALAAASTDPSDLAMVQSTIFNVQRQHLMQLQLIQHLQSQLKRAGGVVAALSRQSGQNYAEQDEDEAAEEAEDVEELDEEQQLSMPSKETSRVNGQRTELDHARLEESSKTDEECNRLAERPRRERSLETTKTQAEADAEAEAEAEGEQELAESEYKPLMCDISSSLAASIITNHDPPPAPNEPNCLEMLQRRTEEVLDSASQSLHAAQMQEEYSEYASKEAQSRGEIFKHRCKYCGKIFGSYSALQIHLRSHTGERPFHCNVCGSKFTTKGNLKVHYQRHTQIFPPMLMPPVVNGVNAPEQFAAIRLPFVAPTAAAPLAAPLPPPPPPPPPPPPSNEQLEEPEALGRLQQAEDLSKPLARELSQSPEQVTQTKSLSEATALVSPEKQDKDQVKDSPKPTTPPTPPAPSPTTPTPATSNRRNGSVRKRQTSQAGSPPGEEHPHAEHHSHLVKLVRRSSASRDGMTAMPAEYSLAQMERIIDKSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCKICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTMDDGSAGHAQLQQLQGQVGDVERLGIEDQNSNKSLGTSDTLDFSTTVSDHSGQRSESSQGGDFDEFMTMDSTDDSRDNSCAVLDRERDRDERSRSDDVEGSGRESASGEMPAMDLSSPSPSATSLARLFGGNSGAGVGVGVGAAATAAAASSGGLPMLHGMPMPPNLLLMAAAREEMHALGQTHAKFPLLPFGPLGLMGLQPPPNVCNLCFKMLPSLAALESHLQSEHAKEVTAPSVRAHCNDALSPYGAKLTLNPNLFAKKPKPASALEMAPADPVTPLSATIKEEPESDQPQQLQLPEEGGCDSGTSSGTSAAAPATAATGYQHESAADAEQSLMKMQLHAHRFPAGPLDFQQALMSAGPPSSSLDPPVNNKHFCHVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPTSRRGRRMSLELPMRPGPGPGPGAPHGVPTAEQEFMQRRPELFFPYLPPFFNGMPPKPGELSPGAFANIPPPHFANGAKYPYPPGLLGFPGFLGAAGGHHQHPYGGVERGNSKSPTSEPAQSPASREDDSGLSNNIWHPLSSIKMESNHNESAGNQSEQEQEAEQEQDQEDCKSVGIDADGEPEADAEDSAEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00525326;
90% Identity: iTF_00514342;
80% Identity: -