Basic Information

Insect: Drosophila mimetica
Gene Symbol: indra
Assembly: GCA_037075245.1
Location: JBAMCH010000004.1:29368449-29370771[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0096 0.74 10.5 2.8 1 23 243 266 243 266 0.98

2 7 0.00084 0.065 13.9 2.4 1 23 274 297 274 297 0.96

3 7 0.00074 0.057 14.1 0.1 1 23 470 493 470 493 0.98

4 7 2.3e-05 0.0018 18.8 2.8 1 23 501 524 501 524 0.97

5 7 0.017 1.3 9.8 1.0 2 23 670 692 669 692 0.95

6 7 0.0092 0.71 10.6 1.5 2 19 697 714 696 717 0.92

7 7 0.019 1.4 9.6 1.2 3 23 726 749 724 750 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0096	0.74	10.5	2.8	1	23	243	266	243	266	0.98
2	7	0.00084	0.065	13.9	2.4	1	23	274	297	274	297	0.96
3	7	0.00074	0.057	14.1	0.1	1	23	470	493	470	493	0.98
4	7	2.3e-05	0.0018	18.8	2.8	1	23	501	524	501	524	0.97
5	7	0.017	1.3	9.8	1.0	2	23	670	692	669	692	0.95
6	7	0.0092	0.71	10.6	1.5	2	19	697	714	696	717	0.92
7	7	0.019	1.4	9.6	1.2	3	23	726	749	724	750	0.90

Sequence Information

Coding Sequence: ATGGCTAGTAAAGCAAAAAAGGAGGTGCCATGCGACCATTGCCACCTTGGCTACGAATCAAAGATGATTTTCACCGCCCAGAAGGCGTTTGTGGGCACAAAAATGGTGGACTTACTGGAGGCCATCACCCACAAGAGCATCCCAGCCAATGCGCCCATTAAGATATGCTTTATCTGTGCATCGAGCTTCACGTCCACCAGCGCCTTGCTCGAAAAGGTCCGGGAAACGGTGGACAGGATCCTGTCAGCGCCCGCCAAAAAGGGCAAGGTCTCCAAGGCGGCGGCAGAGGAACAGGAATCCGCAGCGGACATTGTGGACCTCACCGCAGAGGCGGAGAAGAAACCAGCGGCCAAGAAGAACACCACCATCCGGCAGCGCAGCAAATCCGTGGCTTTTCTTCCTGACAGCCCCATGATTCCACTCCTCACAGGAGTCGATATCATCAAGGCGTCACCCAAGAAACTAGAAAAGACTCCCAAAAAACTGATACCAGCTTCGCCGAGAAAACTCGAGGGTAGCATCATCAAAAAGCTGGAGGATAATCTCAACGATTCCGTGAAGCTGACGCCCGCCAAGGATGTGTCGGCCACGAAGAAGGTTTTCATAAATCTCTTTGGCAACGGCGATGATGATGCCATGGCAAGGGAAATTCAGACCGAGAGCGAGGCTGAAGAGGAGGAAGAGGGGGCCGCGGAATATGCACCCATTACCATGAATCTGAACAGTTTCCAGTGCCAGGAGTGCGAGTTCAACACCAGGTTCCCCAATCACATGAAGGAGCACATGATGAAGGAGCATGGCCATCAGCGGCCCCGCATATACAAGTGCACCCACTGCACCAAGACTTTCGGCGTGTTTAAGACCGTCAAAGCTCATATACGGGACGTCCACAAGCGCATCCTACAAAACGAAGTCCCGCTGAAGGGAAGGGCAAAAGGAAAGGAGAAGGAGTCGGAGGCTAAGCAGAAGGCAGAACCAAAGCCAAAGGTGCAGAAAGCCCCCGACAACAAGCCAAATGTGCCTGAGACTCAGGCCAAGAGTCCAAAGCCAAAGGAAGTGAAGTCGAAGGccaaaaagcaagaaaaggCAGCGGAGGCCAAGTCTAAGGAGATCCAAAAAGAGACCGAGTCAGGAGAGGAGCCATTTGTCAGCCAGGAGAAAGTGGAAAAGACCCCGCAGCCAAAAGCCACTTCCTTAAAGTCtaaggaaaagccaaaaaagtCAATTGAGCAACCAGTTTTCAGCCAGGAGATAGCAGATGAGACCCAGGGGACCAAAGTGGCCTCCTTCAAAGCCCTCAACGAATCTCTAATGAGGAAAAGGATGCTAGAGAACGTGATCGACTCGGAATACACATTTGCCATTAACGGATCCAGTGCCTCAACTCCCAGGGCCGAATCGGCCAATTTCCAGTGCGACATATGCGACAGCGAGCTGGCGACCGCCAAGCAGATGCAGGACCACATGAAGACCGCTCACGGCATTGATAAACCGAAGGTGTTCAAGTGCCACGTCTGTGAAAAGAGTCTGACCACCAAACAGTCGCTGAAGACCCACTTGGCGACTCTTCACAACGAGGGAGATGAGGTGGGCAAGTCCAGCAAGCGCAAGATTCTGCAagacgaggatgaggacgTGGACATTGAGGGCAGTTTCCAGCAGAACAACACTGtcgacgatgacgacgaagGGCCTGCGGAAGAAAAGATTGTAAGGGAAACCTCTGTGAAAAATACCTCCTCAAAAGGTGTCCTTATGTCTGCCCCTCAGTCGCCCGTCAAGAAGGCAAAGAAAGGCAAAACTAGCTTCGTAGACCTTTCAGAAGTCACCACGAACGGTGAAAGCCCGTCGAAGTCCGAAAAACGTAAGAAGCAAGACAAGCTGGAGGACATAGTCTCACAGGACCCAGATTTAATAAGGTATGAGGGAATCAACCACAATGTGAAGCCGCACAAAAAGGCTCGTCTGGAGTCCATTGGCGACTCCACTGCCGACGAGTCCATACTCAGCTGCGATCAGTGCGGTAAGTTTGTCAACTCGCGACAACGTCTGGACTCGCATATCCAGAAGAAACACTTCTCCGAGCTGAAGTGTAAAACGTGCCACGAAGCCTTTAGCAACCAGTTTGACTATGTGAGTCACTTTTCGAGCTGTGAGGGCACCAATGGATTGCCCTGCGGGGTGGCCAGGTGCACGAAGTCCTTCACCGAGGCCAACTTCCTAAGCTCCCATCTGCGGAAGCGCCACCATTTGGTCTAG
Protein Sequence: MASKAKKEVPCDHCHLGYESKMIFTAQKAFVGTKMVDLLEAITHKSIPANAPIKICFICASSFTSTSALLEKVRETVDRILSAPAKKGKVSKAAAEEQESAADIVDLTAEAEKKPAAKKNTTIRQRSKSVAFLPDSPMIPLLTGVDIIKASPKKLEKTPKKLIPASPRKLEGSIIKKLEDNLNDSVKLTPAKDVSATKKVFINLFGNGDDDAMAREIQTESEAEEEEEGAAEYAPITMNLNSFQCQECEFNTRFPNHMKEHMMKEHGHQRPRIYKCTHCTKTFGVFKTVKAHIRDVHKRILQNEVPLKGRAKGKEKESEAKQKAEPKPKVQKAPDNKPNVPETQAKSPKPKEVKSKAKKQEKAAEAKSKEIQKETESGEEPFVSQEKVEKTPQPKATSLKSKEKPKKSIEQPVFSQEIADETQGTKVASFKALNESLMRKRMLENVIDSEYTFAINGSSASTPRAESANFQCDICDSELATAKQMQDHMKTAHGIDKPKVFKCHVCEKSLTTKQSLKTHLATLHNEGDEVGKSSKRKILQDEDEDVDIEGSFQQNNTVDDDDEGPAEEKIVRETSVKNTSSKGVLMSAPQSPVKKAKKGKTSFVDLSEVTTNGESPSKSEKRKKQDKLEDIVSQDPDLIRYEGINHNVKPHKKARLESIGDSTADESILSCDQCGKFVNSRQRLDSHIQKKHFSELKCKTCHEAFSNQFDYVSHFSSCEGTNGLPCGVARCTKSFTEANFLSSHLRKRHHLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -