Dmim005122.1
Basic Information
- Insect
- Drosophila mimetica
- Gene Symbol
- NFYC
- Assembly
- GCA_037075245.1
- Location
- JBAMCH010000005.1:19694120-19696284[-]
Transcription Factor Domain
- TF Family
- NF-YC
- Domain
- NF-YC domain
- PFAM
- AnimalTFDB
- TF Group
- Other Alpha-Helix Group
- Description
- Diverse DNA binding proteins are known to bind the CCAAT box, a common cis- acting element found in the promoter and enhancer regions of a large number of genes in eukaryotes. Amongst these proteins is one known as the CCAAT-binding factor (CBF) or nuclear transcription factor Y (NF-Y) [1]. CBF is a heteromeric transcription factor that consists of two different components both needed for DNA-binding. The HAP protein complex of yeast binds to the upstream activation site of cytochrome C iso-1 gene (CYC1) as well as other genes involved in mitochondrial electron transport and activates their expression. It also recognises the sequence CCAAT and is structurally and evolutionary related to CBF. The first subunit of CBF is known as CBF-A or NF-YB in vertebrates, and HAP3 in budding yeast. The second subunit is known as CBF-B or NF-YA in vertebrates and HAP2 in budding yeast. It is a protein of 265 to 350 amino-acid residues which contains a highly conserved region of about 60 residues. This region, called the 'essential core' [2], seems to consist of two subdomains: an N-terminal subunit-association domain and a C-terminal DNA recognition domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.065 1.3e+03 -1.3 2.6 147 177 39 69 12 105 0.62 2 6 6.2e-51 1.2e-46 159.5 0.1 18 127 131 240 113 250 0.95 3 6 1 2e+04 -15.6 34.5 150 227 336 409 320 418 0.65 4 6 6.8e-05 1.4 8.5 36.7 141 251 382 502 378 508 0.78 5 6 1 2e+04 -25.3 54.2 150 221 503 575 499 586 0.67 6 6 1 2e+04 -20.1 40.6 150 228 563 639 562 647 0.66
Sequence Information
- Coding Sequence
- ATGTACGCCACCAACAATGGCGGCACGAACAAGGCGCCAAATAGCAATGCCACCACCATGTTCGACAACACCATCACAGTGACCCCCATCAAAATGGAGCTGGGCCAGGCGTACGCCAAGGCCCAGAACCCAGCAGCCATGCAGCGGAGGACGCCCAACGCAGTGGTGGTCACCACCTccgccgcccagcagcagcagccacagcaggGCGTTCCCCTGGGCAGCCTGGTGTCCAGTGCCGCCTGCACCCTGGTCAATCCCAGCATGAGTGTGACgatggccaccaccaccaacacgGCCGCCGTCGGAACGGGCGGAGGTGCCGGCGGCGGTGCCAAGGAGAAGACCACCAAGGCCACACGGACGCAGGTGGCCCGCAAGCCGCCGCCAACGATCGACAACTTCTGGCCGAATATCGTTAGCGAGGTGCACGGCATCGGGCAGGTGGATGCCAAGCACCAGGTGCTGCCGCTGGCGCGCATCAAGAAGATCATGAAGCTGGACGAGAACGCCAAGATGATTGCCGGCGAGGCGCCGCTGCTGTTCGCCAAGGCCTGCGAGTACTTCATCCAGGAGCTGACCATGCACGCCTGGGTGCACACCGAGGAGAGCAGGCGGCGCACGCTGCAGCGGTCCGACATTGCCCAGGCCATTGCCAACTACGATCAGTTCGATTTCCTCATCGACATAGTGCCGCGCGAGGAGATCaagccgtcgtcgtcgtcttcgtCGTCGGCGCAAAAGGGCAAGGATGGCAGCAGTTCCAGCGGAATGGCTGGCACTGGCTCCAGCAGCAGTGCCGCCTCCTCCACGTCCAGCACAGCCAACACCTCGAatgccggcggcggcggcggcggcgttaCCGTGGCTGGCAACTCTTCCGCCACGGGGAACTTTGTAGCCAGTGGATCCACCGTACCTGCCACGGCCACGGCTGGTGGCCTCAAGTTGGACACCACGGGCGCAGCCAATGCCGCCGAGGTGCTCGGCTTCAGCACCGTCAATCCGGACATCTTCTCAgcgcaactgcagcagcagcagcagcaacaacagcagcaacagcaacatgccgcccagcagcagcagcatcaccaGGCGCATCCACAACAGGTTCAAATCATCCAGCAGGGAGCtggtggccagcagctgcagtACTTCATTGCGCTGCCCGGCCAGCAGGCGGCACAGCTTGTGCAGCACGTgcaacagcagccgcagcccGCCCAGAGCCATCTGCCCAACAGTCTGGGCATCAACATAGTGTCGGCCACTCAACCCACCCAGCAGTTGATACTCACGGCCGGGCCCAATGGCCAGCTGACGGCCACGCCGGCGCCGCAAACGGCCGCTCAGCAGCAGACGGCCCTGCTCCAGAATCtcgcccagcagcaacagcagcaccagcaacaacagcagcagattCAGTTGCTCCAGCAAGTGGTGACGCCCACGGGGGAACTGACCAATGTGCCGATTGCCATCAATGCCAACCACTTGCATCTCTTGCAGCGCCTGCaaatgcaacagcagcagcagcaacagcagcaacaacaacagcagcagcaacagcaggtaATCATACCAACGCAACTGCTGACGGcccagcagctgctccagttGGGCGGCGCACCCACGGTggcccaccagcagcagcagcaggttcaagtccagcagcagcagcagcaacaacagcagcagcaagtccAGGTGCAggtccagcagcaacatgccaATCTCAGCCAGGGCAACGCCAATGCGGTGGCCAGTGGCACGCCGATCTTCATCAACTCAACAATGTCCAGTGCACAGGCGGCGGCGAcgcaggcgcagcagcagcagcaggcggcgcaacagcagcatcagcagcagcaacaacagcagcagcagcaggcgcaaaCGATCTCCACCATGTCCGCGGATCGCACACTAAGCGGGGGATTTCGGTAA
- Protein Sequence
- MYATNNGGTNKAPNSNATTMFDNTITVTPIKMELGQAYAKAQNPAAMQRRTPNAVVVTTSAAQQQQPQQGVPLGSLVSSAACTLVNPSMSVTMATTTNTAAVGTGGGAGGGAKEKTTKATRTQVARKPPPTIDNFWPNIVSEVHGIGQVDAKHQVLPLARIKKIMKLDENAKMIAGEAPLLFAKACEYFIQELTMHAWVHTEESRRRTLQRSDIAQAIANYDQFDFLIDIVPREEIKPSSSSSSSAQKGKDGSSSSGMAGTGSSSSAASSTSSTANTSNAGGGGGGVTVAGNSSATGNFVASGSTVPATATAGGLKLDTTGAANAAEVLGFSTVNPDIFSAQLQQQQQQQQQQQQHAAQQQQHHQAHPQQVQIIQQGAGGQQLQYFIALPGQQAAQLVQHVQQQPQPAQSHLPNSLGINIVSATQPTQQLILTAGPNGQLTATPAPQTAAQQQTALLQNLAQQQQQHQQQQQQIQLLQQVVTPTGELTNVPIAINANHLHLLQRLQMQQQQQQQQQQQQQQQQQVIIPTQLLTAQQLLQLGGAPTVAHQQQQQVQVQQQQQQQQQQQVQVQVQQQHANLSQGNANAVASGTPIFINSTMSSAQAAATQAQQQQQAAQQQHQQQQQQQQQQAQTISTMSADRTLSGGFR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00536752;
- 90% Identity
- -
- 80% Identity
- -