Basic Information

Insect: Drosophila micromelanica
Gene Symbol: salm
Assembly: GCA_004143905.1
Location: SCDX01000373.1:18060-24635[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.9e-06 0.00013 22.0 1.7 1 23 334 356 334 356 0.98

2 8 2.7e-05 0.0019 18.3 3.5 1 23 362 384 362 384 0.98

3 8 1.9 1.3e+02 3.1 2.5 5 23 625 643 622 643 0.84

4 8 2.8e-08 2e-06 27.7 0.2 1 23 649 671 649 671 0.98

5 8 0.00084 0.059 13.6 0.9 1 23 681 703 681 703 0.98

6 8 0.042 3 8.3 0.1 2 23 909 931 909 931 0.96

7 8 9.1e-06 0.00064 19.8 5.0 1 23 1063 1085 1063 1085 0.96

8 8 7.3e-08 5.1e-06 26.4 0.7 1 23 1091 1113 1091 1113 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.9e-06	0.00013	22.0	1.7	1	23	334	356	334	356	0.98
2	8	2.7e-05	0.0019	18.3	3.5	1	23	362	384	362	384	0.98
3	8	1.9	1.3e+02	3.1	2.5	5	23	625	643	622	643	0.84
4	8	2.8e-08	2e-06	27.7	0.2	1	23	649	671	649	671	0.98
5	8	0.00084	0.059	13.6	0.9	1	23	681	703	681	703	0.98
6	8	0.042	3	8.3	0.1	2	23	909	931	909	931	0.96
7	8	9.1e-06	0.00064	19.8	5.0	1	23	1063	1085	1063	1085	0.96
8	8	7.3e-08	5.1e-06	26.4	0.7	1	23	1091	1113	1091	1113	0.98

Sequence Information

Coding Sequence: ATGTGTTCAATATTTCGTAACCGCATTAATTACCGGAGCACAGGCACGCGGAGTGGGTCCTCCAATGGGAGCGCCTCGGTGGGCGCAGACCCAACGGGAGACAATCTGCTAGCCAAAGAGCTAAATGCGGATAGCAATAACAACGACAGCGCTGCTGACGAAACGCGACCAGAAACCGAACTGCAGCTGGAATCGGAGTCATCGTTGCCCTGCGCTGATCAGCCGGAGAACAGTAATGAGGCGCTGGATTTATCGGTAATATCCGGTAGCCGTTTACCCACTAGTGGGCATGTGGCACTAGAAGCTTTACAACATACCAAAGTGGCGGTGGCACAGTTTGCGGCCACTGCGCTGCCGGGATCTTCTGATCCAAATGATCTAGCAATGGTGCAATCGACGATCTTCAATGTACAGCGACAGCATctaatgcagctgcagctcatcCAGCATCTACAGAGTCAATTGAAGCGAGCGGGTGGTGTGGTGGCTGCATTAAGCAGACAAGGCCAAATCTATCCTGAGCCtgaagacgacgacgatgaggaAGAGCACCCAAACCCTTCCAAAGAGCAGCTAAGAGTAAATGGCGAGGCAGAAGAGATTGATCACGAAAGGCTGGAGGAGAGTTCAAAGACTGATGAACAGGACATGTCCATGGAGATTAAGGCAATAGCCAACGAGTGCAATAGCGAACGAGACGTGGCGTTGGCCAAGACGGAGAGTGAACTTGAGTGTGAGAATGAGCCTGAGACCTCCCACGAGCTGGATAATGAATATAAACCGCTAATGTGCGACATCAGTTCAAGTCTGGCGTCAAGTATCATTACTAACCACGATCCACCGCCGGCGCCCAATGAGCCAAACTGCCTGGAGATGTTGCAACGCCGTACGGAGGAGGTGCTGGACTCGGCGTCGCAAAGCTTGCACGCTGCCCAAATGCAGGAGGAATATTCGGAGTACGCCTCTAAGGAAGCACAGAGTCGAGGGGAGATATTTAAGCATCGTTGCAAGTACTGTGGTAAAATCTTCGGCAGTTACTCAGCCCTTCAAATACACCTGCGATCCCACACCGGAGAGAGACCCTTCCATTGCAACGTCTGTGGCAGTAAATTTACGACGAAAGGCAATCTGAAGGTCCACTACCAACGCCATACACAGATCTTTCCTCCCATGCTTTTGCCGCCTGTGGTAAATGGAGGGCCACCCCCTGCAACACCCGAGCAATTTGCAGCTCTGACACCCATTCGCCTACCCTTTGTGACCCCAGCGCCACtaccaccgccaccacctcCTGTCGTGGGTCAGCATAGTGCTGATCAGACAGCGTCAGAATCGTTAGAGTCGCAATCGCTGCCAACGCAAGGTCAGCTACATCGTGCTGAGGATTTGATCAAGCCGGTCCGAGAGAAGTCGCATTCACCTATGCAACCCGTGCACACACCCAAGGCGCTACCCGAACGAAGAAAAAGTCTAAGTACATCGGAGTCTGTGCAGCCTCCGGTGGCTTTGTCCgagaaacaagaaaaagatAAAGCAAAGGAAAGTCCCAAGTCAACTTCGCCGTCAACGTCAGGAAGTCGTCGAAACGGTAGCGTCCGTAAGCGCCAAACTAGTAATGCGGGTACTCCACCTGAGGACGAACGCGATGCTCGGGATGAGCAAATGCAGATTGTCAAGCTAGTGCGTCGCTCTTCGGCCAGTCGCGACGGAACGGTCGCACTTCCAGGCGAATACTCGCTGGCTCAGATGGAGCGCATCATTGACAAGTCGTGGGAGGATCTCATTGAGATCGACAAGACATCAGAGACGTCAAAGCTTCAACAGCTGGTCGATAATATCGAAAACAAGCTGACAGATCCCAATCAGTGCATTTTCTGCCAAAAGGTCATGTCCTGCCGCAGCTCACTGCAGATGCACATACGCACTCACACTGGAGAGCGACCATTTCGCTGTAAAATCTGCGGGCGTGCTTTTGCCACTAAGGGCAACTTAAAAGCGCACATGAGCATACATAAGATTAAGCCGCCTATGCGCAGTCAGTTTAAGTGCCCAGTGTGCCACCAGAAGTTCTCCAACGGCATCATCTTGCAGCAGCATATTCGTATCCACACCATGGATGATGGGAGCGGTGGTCAAGCGCATGGTCAGGGCCACGGTCAGAGCATTGGTGCTGGTGATGCGGAGCGCTTGGGTATCGAGGATCAGAACTCCAACAAGTCAATAGGCACCTCAGACACCTTGGATTTCTCGGCCACCATTTCGGATCACTCTGGCCAGCGGTCAGAGTCTTCGCAGGGAGGCGATTTCGATGAGTTCATGACCATGGACAGCACTGACGACTCTCGCGACAATTCTAGCGTCGCCACGGCCACACTTCTTGACAGAGATAGACGGCCTGCCCAAGATGATGAGCGCTCGCGGTCTGACTTGGAAAGTGGTGGACAAGAAAGCACCAGCGCCGAGATGCCCGCAATGGACCTTTCATCGCCATCCTCGAcgtcggcagcggcggcagcggcagcagcgcgtCTTTTTGGAGTAAGCAACAGTTCAGCAACTGCTGGCACTCCAACTTTACCCATGCTTGGCATGCCTATGCCTCCGAATTTGCTGCTCATGGCAGCAGCGCGAGAGGAGATGCACGCACTAGGCCAGACGCATGCCAAGTTTCCACTGCTGCCCTTCGGGCCGCTTGGATTAATGGGACTGCAGCCGCCCCCAAATGTGTGCAATTTGTGCTTCAAGATGCTACCCAGCCTGGCCGCCTTGGAAAGCCATCTACAGAGCGAACATGCCAAAGAAGTGACGGTTCCTTCCGCCCGAGCCCACTGCAACGAAGCGGTATCACCGTACGGAGCAAAGCTCACTCTCAATCCAAATCTCTTTGCCAAGAAGCCGAAGCAATCACAGGAGCTGGCGCCTACGAAGCCAGTCACGCCATCGGCGGCACCGATTAAAGAGGAGCCTGAATCCGAGCAGCTGACGGTCGATGAGGGTGGCTGCGATGGTGGCTCTACTCCATCCGCCACTAACTATCAACACGAGGCAGCTGCCGATGCAGAGCAGTCGCTGATGAAAATGCAGTTGCATGCTCATCGTTTTCCAGCTAGCCCGCTGGACTTTCAGCAGGCACTGATGTCGGCTGGGCCGCCTAGTTCTAGCCTAGACCCGCCAGTGAACAACAAGCACTTCTGCCACGTCTGTCGACGGAATTTTAGCTCCAGCTCAGCTCTACAAATTCACATGCGCACTCACACCGGAGATAAACCCTTTCAGTGCAATGTCTGTCAAAAGGCATTTACCACTAAAGGGAACCTTAAGGTTCACATGGGCACGCATATGTGGACAAATCCAACTTCGCGTCGTGGCCGCCGCATGTCCTTGGAATTACCCATGCGACCTGGACCTACGCCGGGGGCCGCACATGGAGCGCCGTCTGCTGAGCAGGAGTTTATGCAGCGCAGACCGGAActtttttttccatatttgCCACCCTTCTTTAACGGAATTCCACCTAAGCCCGGCGAATTAAGTCCTGGCGCTTTTGCCAACATTCCTCCACCGCACTTTGCAAATGGAGCTAAGTATCCGTATCCACCTGGTCTACTGGGTTTTCCAAGCTTTCTAAATGGCCCTGGGGCTCACCACCAGTATCCACATGGCGTTGAGCGAAGTAATAGCAAGTCACCAACTCCGGAACCAGCGCAGAGTCCTGCATCGCGGGAGGATGATGGAGGTATATGTAATAACATATGGCATCCGTTGAGCAATATTAAGATGGAAAGCAATCAAAATGACAACATTGGCAATCAGAACGAGAAGGATCAGGATCTGGAGGATAATGGAGGGGCGGAAGTAGACACTGAACCTGAGGGAAGTGCTGAAGAGCTTGAATCCCGGCGCGCAGAGAAGTAG
Protein Sequence: MCSIFRNRINYRSTGTRSGSSNGSASVGADPTGDNLLAKELNADSNNNDSAADETRPETELQLESESSLPCADQPENSNEALDLSVISGSRLPTSGHVALEALQHTKVAVAQFAATALPGSSDPNDLAMVQSTIFNVQRQHLMQLQLIQHLQSQLKRAGGVVAALSRQGQIYPEPEDDDDEEEHPNPSKEQLRVNGEAEEIDHERLEESSKTDEQDMSMEIKAIANECNSERDVALAKTESELECENEPETSHELDNEYKPLMCDISSSLASSIITNHDPPPAPNEPNCLEMLQRRTEEVLDSASQSLHAAQMQEEYSEYASKEAQSRGEIFKHRCKYCGKIFGSYSALQIHLRSHTGERPFHCNVCGSKFTTKGNLKVHYQRHTQIFPPMLLPPVVNGGPPPATPEQFAALTPIRLPFVTPAPLPPPPPPVVGQHSADQTASESLESQSLPTQGQLHRAEDLIKPVREKSHSPMQPVHTPKALPERRKSLSTSESVQPPVALSEKQEKDKAKESPKSTSPSTSGSRRNGSVRKRQTSNAGTPPEDERDARDEQMQIVKLVRRSSASRDGTVALPGEYSLAQMERIIDKSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCKICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTMDDGSGGQAHGQGHGQSIGAGDAERLGIEDQNSNKSIGTSDTLDFSATISDHSGQRSESSQGGDFDEFMTMDSTDDSRDNSSVATATLLDRDRRPAQDDERSRSDLESGGQESTSAEMPAMDLSSPSSTSAAAAAAAARLFGVSNSSATAGTPTLPMLGMPMPPNLLLMAAAREEMHALGQTHAKFPLLPFGPLGLMGLQPPPNVCNLCFKMLPSLAALESHLQSEHAKEVTVPSARAHCNEAVSPYGAKLTLNPNLFAKKPKQSQELAPTKPVTPSAAPIKEEPESEQLTVDEGGCDGGSTPSATNYQHEAAADAEQSLMKMQLHAHRFPASPLDFQQALMSAGPPSSSLDPPVNNKHFCHVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPTSRRGRRMSLELPMRPGPTPGAAHGAPSAEQEFMQRRPELFFPYLPPFFNGIPPKPGELSPGAFANIPPPHFANGAKYPYPPGLLGFPSFLNGPGAHHQYPHGVERSNSKSPTPEPAQSPASREDDGGICNNIWHPLSNIKMESNQNDNIGNQNEKDQDLEDNGGAEVDTEPEGSAEELESRRAEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00475377;
90% Identity: iTF_00561194;
80% Identity: -