Dmic004212.1
Basic Information
- Insect
- Drosophila micromelanica
- Gene Symbol
- -
- Assembly
- GCA_004143905.1
- Location
- SCDX01000728.1:10198-18227[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00021 0.015 15.6 3.4 1 23 299 321 299 321 0.98 2 11 0.001 0.071 13.4 10.5 1 23 328 350 328 350 0.96 3 11 0.0001 0.0072 16.5 6.5 1 23 356 378 356 378 0.98 4 11 0.00031 0.022 15.0 2.3 1 23 384 406 384 406 0.95 5 11 2.2e-05 0.0016 18.6 0.5 1 23 412 434 412 434 0.97 6 11 1.5e-05 0.001 19.2 0.1 1 23 440 462 440 462 0.98 7 11 0.00013 0.0088 16.2 2.0 1 23 467 490 467 490 0.97 8 11 0.052 3.7 8.0 0.3 1 23 496 519 496 519 0.94 9 11 0.00017 0.012 15.8 0.1 1 23 578 600 578 600 0.98 10 11 0.015 1.1 9.7 2.7 1 23 713 735 713 735 0.95 11 11 0.0045 0.31 11.4 4.9 5 23 748 766 740 766 0.92
Sequence Information
- Coding Sequence
- ATGTGCGCTGCACAGAGCAATCCGCCGCCCTTCGGCTACGCTTGGGGCTTTGCAGACAACGGCAACCGTGCCGCAGAATCTGTTTTGGAGATATCGCCAAATATTAACTACACCGTCAGTGGGGAATCGATGCCCTATCTGTTATCCACGGATGGATCATTGGCCGTACAAAAGGATGTTAAAGGTGCACTCGCTGCCAGCAATAAGGGCAATGTCGTTCGTCGCATGTTCGTGGTGAACGATTCCTCATTTGCGCCCGGAACACAAAGAGTAATTACCACAGGCGCCGCATCGACGGTGGTCAAAAAACAGGATTCTGGTCAACAGGTGTTGAGCATAAATTCGCTCGATAAGAACTATCTTTTGGTCGATcaggcaacagcggcagcagctgcggctgcagcagcagcagcaggtggagGTGatccggcggcggcggcagctgcacatcatcatcatacaCTGACAAATGGCAGCATTGTTGATGCCAAAACTGGACAAACGGTATTGACCGCATCGAATGCCGCTGCGGCCAAATCGCATTTTAGCTCGATTGGTGCCTTGCATCTGACCCAAGAGGAATGCAATGAGATCTTACTTAAGCGCGCCATTGCAGCCGGCCACGGCCACCATcagacgcacacactcacCGCTGGCGACGGATCGCACCACCATCATTCGACGGCGCCAGGCGCGACACCAAGTGACATACTTCCTGGTATTTCAGTTCAAGTACAGAAAGTAATACAAGGACTCGAAGAGAACGAGGACTCGCAGGGCGACGCACCCAACTTAAAGTTGGAGCCAGGCACATTAGAATTGTCCCCAAAGACCGAACTACAGGAATCAATGCATTTCAGCGAAACCGACGCCACCATCAAAAAGGAGCGCCCGTACAGTTGTGACGAGTGCGGTAAATCCTTTCTGCTCAAACATCATTTGACAACACACGCACGCGTGCACACAGGTGGCGAACGTCCACACATTTGCACCCATTgcggcaaaagttttgcgcaCAAACACTGTCTGAATACGCATCTGCTGCTCCACTCAACCGATCGGCCATATCAGTGTCAGGAGTGCAAGAAGAGTTTCACACTTAAGCATCATCTGCTGACGCATTCGCGTGTCCATAGCCGGGAACGGCCGTTTGTCTGCCAGGAGTGCGGACGTTCATTTCCTCTCAAGCGTCATCTGGTCACGCACAGTAAATTTCACGCCGGCGAACGTCCCTACGTCTGCGAGGAATGCGGTGAAAGTTTTGCACAGGAAAACCACCTGATTATGCACTCGCGCTTTCATGGTTCATTGAATCCATTTGTTTGTGCTGACTGCGGTGCCTCATTTCCACGCAAATTTCAACTGGTTAACCACGGACGCATACACGGCAAGATACCACACTCCTGCACGGTTTGCGGCAAAGAATTTTTACAGAAGCGCACGCTAGTTTCCCACATGAGgcGCGTACATACCGGCGAGCAGGCGCATCCCTGCGTTAGCTGCGGCGAGGGATTCCTCACCAAAGCGGAGCTGCATCAACATGTGCGTGCGGCGCACAATGGCGTTAATCCCAATACGAGCAGCGCCACCATTATCGCCAATCAACAGcaGATACAACAGCCGCATCATCATCCCGGACATCCGCAGACCATAACGGTTGTCAGCAATCCGGCTAATTCAACGCTGCTCACCGTCTCCACAACCGATGCGAATGGCGTGGCGCGTCCCCAATTTGTCTGCCGTGAATGTGGCAGCGCGTTTAATAGCCGTGAGGCGCTCGCCTTGCACTTGCGACTGCATACGGGCGATAAGAGCCTGATGACCGATCTGTGCGCCTTGACGGCAGCGCTGCCGGGTCACTTTTTGAGCACGGCCAGCCTGAATCCGGGCACTGTGGTAACGGCcaatccaaatttggtgggACAGAGTCCGGTGCCCGTTCAAATCATATCATCCACCGGTCAGGTGATGTCACAGACCACGCTGGTGCAGGCCGCCAATTCGACCCATCCGCAGGCCGTTGTCACCGCTGTGCCCACAATGCCCGTGCACGGACAGCATCTGCAGCAcgtccagcagcaacagcagcagcagcaacatgtggTCACCGTCTCGCCGGCCAATAAGCCCAAATCGCATTTCTGTGCCAGCTGCGGCAAAGGATTCGCCGCCAAGCACGGGCTAATGCAGCACAATCGACGACATCCAAACGGCGGCTGCACGGTGCGCACCCATGTCTGCGAGTGTGGAAAGGCGTTCTTCCAAAAGAATCATCTGATGCTGCATCAGCGCCAGCATTTGGAAACAAAGCCAGCCATatcgcagcaacagGAGGCGgacgtgcagcagcagcagcaacagcagcaacaacaagcggcagctgccgcagccgccgctgccggACAACAGTCCACACAGGTGGAGGTACAAATTGTGCCCGGTAGCCATGGCAAGGTCATCAAATACGAGATCTGTCGAAATGTGTTGCAGGAGGAGCAGgcggcacagcagcagcagcaacagcagcagcagcaggcgtcGATGCATGCGGAATAA
- Protein Sequence
- MCAAQSNPPPFGYAWGFADNGNRAAESVLEISPNINYTVSGESMPYLLSTDGSLAVQKDVKGALAASNKGNVVRRMFVVNDSSFAPGTQRVITTGAASTVVKKQDSGQQVLSINSLDKNYLLVDQATAAAAAAAAAAAGGGDPAAAAAAHHHHTLTNGSIVDAKTGQTVLTASNAAAAKSHFSSIGALHLTQEECNEILLKRAIAAGHGHHQTHTLTAGDGSHHHHSTAPGATPSDILPGISVQVQKVIQGLEENEDSQGDAPNLKLEPGTLELSPKTELQESMHFSETDATIKKERPYSCDECGKSFLLKHHLTTHARVHTGGERPHICTHCGKSFAHKHCLNTHLLLHSTDRPYQCQECKKSFTLKHHLLTHSRVHSRERPFVCQECGRSFPLKRHLVTHSKFHAGERPYVCEECGESFAQENHLIMHSRFHGSLNPFVCADCGASFPRKFQLVNHGRIHGKIPHSCTVCGKEFLQKRTLVSHMRRVHTGEQAHPCVSCGEGFLTKAELHQHVRAAHNGVNPNTSSATIIANQQQIQQPHHHPGHPQTITVVSNPANSTLLTVSTTDANGVARPQFVCRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAALPGHFLSTASLNPGTVVTANPNLVGQSPVPVQIISSTGQVMSQTTLVQAANSTHPQAVVTAVPTMPVHGQHLQHVQQQQQQQQHVVTVSPANKPKSHFCASCGKGFAAKHGLMQHNRRHPNGGCTVRTHVCECGKAFFQKNHLMLHQRQHLETKPAISQQQEADVQQQQQQQQQQAAAAAAAAAGQQSTQVEVQIVPGSHGKVIKYEICRNVLQEEQAAQQQQQQQQQQASMHAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01556276;
- 90% Identity
- iTF_00803779;
- 80% Identity
- -