Dmer013873.1
Basic Information
- Insect
- Drosophila merina
- Gene Symbol
- -
- Assembly
- GCA_035047645.1
- Location
- JAWNPH010000059.1:21930097-21932781[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.063 5.8 7.8 5.9 3 23 261 281 259 281 0.96 2 12 0.0042 0.38 11.5 0.4 1 23 287 312 287 312 0.93 3 12 0.0029 0.27 12.0 1.0 1 23 319 344 319 344 0.95 4 12 7.2e-05 0.0066 17.0 1.9 1 23 356 378 356 378 0.98 5 12 2.2e-06 0.0002 21.8 0.2 1 23 385 407 385 407 0.98 6 12 0.0062 0.56 11.0 0.1 1 23 413 435 413 435 0.98 7 12 0.006 0.55 11.0 4.0 1 23 441 464 441 464 0.98 8 12 0.0082 0.75 10.6 3.9 1 23 470 492 470 492 0.96 9 12 0.00014 0.013 16.2 3.6 2 23 499 520 498 520 0.96 10 12 3.6e-05 0.0033 18.0 0.3 1 23 630 653 630 653 0.96 11 12 0.0096 0.88 10.4 1.2 1 19 659 677 659 681 0.94 12 12 1.6e-06 0.00015 22.3 4.1 1 23 687 709 687 709 0.99
Sequence Information
- Coding Sequence
- ATGGACGTGGACCGTGCCGATTACACGGTACATTCAGTATGCCGAATCTGCTTAAAACGATTGCCCGACAACGGAACGGGAGCGCACGACTTGTTCCTGGAGCCGGGACTGGCCAAAAAGCTATGTATGTGCACCTCGTTGGCGGTGGAGCCGCAAGACGGCTTCCCCAAATGCCTGTGCTTCATCTGTTACACAAAGTTGGACGACATGCACGAATTCCAGAAACTCTGTGTGGATTCCGTGCGGAGGTTCCAGGACATGATGGCCAAAAGCGTTTTTTGTCCGTCGGCCACAGCGCAAATCAAGACATTTGATTTGCTAAACGTAGCTGGAAATGAAGCAGAGCTGGTGGgacaggaggaggaggatcgCATTAACTTTGACCCCCTGTTGGACCACAAAATGGAGCTAATTGAGAATGCGGATGTGTTCAAGATGCTGGAGCACGTTGATAAGGAGGCCGAGCTGGTGGAGAAAGAGGTGAAGCAGGACGAAATGGATTCCGCCGATCTGATCAACCTTTTCGCCGGCGATTCGTCGGAGGAGAGTGAAAACCAAGATGTGGACTTTGAGCCCAGCAGCGACGACGATATACCCATTGCCCAGCGGATCAGGGGAAATACCCTGCACGCGACAAAACCAAGAGCAGGCCGATCTGTGAAGAAGGAGGAGGATCAGCTCTTATCCTGTTCGGATGACCAGGATGAGGACGGAGAAAAGTCAAAGGCGCAGCGTAAGAAAATTCCGCCTGGGGAACGTCATCTTCATCGCATCATCGACTGCCATATCTGCCACCAGAAGTTCAAGAAGGCGATCCGGTACGAGGAGCACATGAAGCACCACAACGACCTTCTACCCTTTCAGTGCACCGTCGAGAGTTGCAGGAAGGGTTTTACAACTGCTGGAGGATTAAGGTTGCACATAGACCATGCCCACACGGAGTTGTCGGAAGTGCACTCCTGCAGCGTGGAGGGTTGTGGCAAAACGTTCCCACGCATCCGCCTCCTTACGTTTCACATGAAAAAGGCGCACGGCATCACCAAGGCAGCAGCTCCACCCAGGGATTACCCTTGTTCCGAGTGCGACAAGGTGTTCCGGTGCCCGATGGCTCTGAAGAAACACATGTACAAGCATGACGGCAAGGAACTCCCTTTCCCATGCAACATTTGCGGCAAGCGGTTTGTGATCAATAGTGCTTTAAAGGACCACTTGATGAGGCATGCCGGAATCAAGAATTATGTATGTCCATACTGTGGAGTGGGAAAAACCACGCGGCAAGAATGGAACACGCACATCCTAACCCATACTCAGGAGAAGAAGTTCAAATGCCACATCTGTGAGCACGCCTCGCACAATAAGCAAAGTTTGGCAAATCACATCAAGATAGTTCATGAGAAGATCAAAAACTACGCGTGCCAGTACTGTGGAAAGACCTTTGGGAAGTCGCACGCCTGCAAGATCCACGAGATGACTCACACGGGTGAGAAGCGTTGCGAGTGCAAGGTTTGCGGCAAGAAATTCTTGTACCCAAAGAGCCTCACAAAGCACCTAAAGACGCACGAGAAACGGGTGCTCAGGGCCATCGAGACTTATCGCCAGCGGCAGGTGGAAATGGGTGAAGCCCCAACCGATCAATTGCTTAATACTCCAGATCTAACAGGAGTTCCAGTCGAAGGGGATCCCACGGAACCCATAATGGTTTCCCAAAACGCTGCTGATGAGCTGCTGAAGGTGTGCGCCGAATCGGTGGCCACCATACCCAAAGACCCACGCCGCGTTGAACGAGTGGATATCGCCCAATTAGCGGGCACTGCTGTGAATCCGATACCCTCTGTATCCGTGCCCTCGTGGTCGCCGCAAGTGAACTTCACCAAGAAGGAGGGCAAGCATATCTGCCCGGGATGTGGGCAGGGATTTAACAATATCGGCAACATGAAGCGGCACTACAAGATCATCCATGAGAAAGTTAAGGACTTTGCCTGCCGCTTCTGCCCTAAGAGATTTGCAAAGGCGCAAACATTGCGGCACCACGAGTGGATCCACACGGGCGAGAAGCCTTTCGAATGCAAAACCTGCGGCACACACTTCCGTCAAGAAACGGCATTAAAACGCCACCAGCGTACCCACGAGAATCGGCCACCTGTGATTTCACCCAAGTTCTATGCAGCGCGCGAGGAGTTGGAAGAGCAGGAGCGAAGCAAGCGAGAGGCGAAGCGGCAGGCGGAGGCTAAACGGAAAGAAATTGCAGAGGCGGCCAAAGAGCAGCTTTCCTCTCTGCACAAAATCGAGCAGACCGATCGAAATCTACATTCTTATGACGAATATaaggaggcggcggcggaaAGAGCAGCTGCGTCTGCTGAACTCCAGGCGCAACAGATCGAAGAGAACCAAGTGAAGCGCCAAGCCGACGAAGAGCGACGCCGCATCCAAGAAGCTGCCCAGGAACAACTTCATCGGCTGCAACATCAACAGGAGATCGATCGAGCCCAGAGCTCCTACGATGGCTATTACGCTCAGAAGGCCCAGGCCGACGGCTCCAGCCTCGACGACTTAAAGATAGACCATGTGTGA
- Protein Sequence
- MDVDRADYTVHSVCRICLKRLPDNGTGAHDLFLEPGLAKKLCMCTSLAVEPQDGFPKCLCFICYTKLDDMHEFQKLCVDSVRRFQDMMAKSVFCPSATAQIKTFDLLNVAGNEAELVGQEEEDRINFDPLLDHKMELIENADVFKMLEHVDKEAELVEKEVKQDEMDSADLINLFAGDSSEESENQDVDFEPSSDDDIPIAQRIRGNTLHATKPRAGRSVKKEEDQLLSCSDDQDEDGEKSKAQRKKIPPGERHLHRIIDCHICHQKFKKAIRYEEHMKHHNDLLPFQCTVESCRKGFTTAGGLRLHIDHAHTELSEVHSCSVEGCGKTFPRIRLLTFHMKKAHGITKAAAPPRDYPCSECDKVFRCPMALKKHMYKHDGKELPFPCNICGKRFVINSALKDHLMRHAGIKNYVCPYCGVGKTTRQEWNTHILTHTQEKKFKCHICEHASHNKQSLANHIKIVHEKIKNYACQYCGKTFGKSHACKIHEMTHTGEKRCECKVCGKKFLYPKSLTKHLKTHEKRVLRAIETYRQRQVEMGEAPTDQLLNTPDLTGVPVEGDPTEPIMVSQNAADELLKVCAESVATIPKDPRRVERVDIAQLAGTAVNPIPSVSVPSWSPQVNFTKKEGKHICPGCGQGFNNIGNMKRHYKIIHEKVKDFACRFCPKRFAKAQTLRHHEWIHTGEKPFECKTCGTHFRQETALKRHQRTHENRPPVISPKFYAAREELEEQERSKREAKRQAEAKRKEIAEAAKEQLSSLHKIEQTDRNLHSYDEYKEAAAERAAASAELQAQQIEENQVKRQADEERRRIQEAAQEQLHRLQHQQEIDRAQSSYDGYYAQKAQADGSSLDDLKIDHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00504136;
- 90% Identity
- iTF_00615702;
- 80% Identity
- -