Basic Information

Insect: Drosophila meridiana
Gene Symbol: -
Assembly: GCA_035045185.1
Location: JAWNPF010000055.1:17036023-17037916[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.35 26 5.7 0.4 2 23 136 158 136 158 0.86

2 7 4.5e-06 0.00034 21.1 3.0 1 23 175 198 175 198 0.98

3 7 9.9e-06 0.00074 20.0 2.3 2 23 300 321 299 321 0.96

4 7 0.0042 0.31 11.7 5.8 1 23 327 349 327 349 0.98

5 7 1.6e-05 0.0012 19.3 1.6 1 23 355 377 355 377 0.96

6 7 1.8e-06 0.00014 22.3 3.0 1 23 383 405 383 405 0.99

7 7 0.00016 0.012 16.2 3.3 1 20 411 430 411 432 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.35	26	5.7	0.4	2	23	136	158	136	158	0.86
2	7	4.5e-06	0.00034	21.1	3.0	1	23	175	198	175	198	0.98
3	7	9.9e-06	0.00074	20.0	2.3	2	23	300	321	299	321	0.96
4	7	0.0042	0.31	11.7	5.8	1	23	327	349	327	349	0.98
5	7	1.6e-05	0.0012	19.3	1.6	1	23	355	377	355	377	0.96
6	7	1.8e-06	0.00014	22.3	3.0	1	23	383	405	383	405	0.99
7	7	0.00016	0.012	16.2	3.3	1	20	411	430	411	432	0.95

Sequence Information

Coding Sequence: ATGTGCTCCATGTCCGTGTTGTGTCCGCTGTGCGCGGTGCCGAGTTTCGCTAGCATCGATGCACTGCAGCAGCGCCTCATCAAGGCGGCCAACGGGCCCTTGGCCTGTCCCTTTCCCAACTGCAAGGATCTCTTCTTGGGTCTGGACAAGCTGACTATACACCTATTCAGTCACACTAGCCTGATGAGCCAGACCGAGGcagccccagctccagcttcagttccagttccagttgtgCTGCCTCAGCAAGCTGCAGCAGAGGCTGCTCCCGCTTTTCTTCCTTCGACTAATTTCCCTGCTGCAGCTAGTCCGCCTCCAACGGCTGCAGTTGTCAAGCGACGTGGCAAGAAGTCGCGAGCCAAGCCCATCGAGCAGCCGCTCCCGCcgcctgccacgcctccagccAGGTGCGACATTTGCGAGTTCAATTTCCGCAATGAGGAACTGCGCGACATTCACTTTCGGCTGGTGCACGAGAATGCGGAGATAGCGGAGCCGGTGCAgggccagcagcaggagccgtACAAGTGTCACCTCTGCTCCAAGACGTTTCGCATGAAGGGCTCGCTGCGTGTGCATCTCAAGGTGCTGCACACAGTCGGCGCTGTGGCAAGTgccaccagcaacaacaacaacaatcagaacaacaacaacagcaacaacaacactcaAACCCACAGTTCGAGCAACACAAATGGCCACATCATTAGTGCCACGCCCAAAATAAGCATTTGCGATCGCATTCGGCACAAGGAGGCATCCTCCAGCAATGGTAGCATCGCCTCCACGGCGAACAGCAACACCCAACCGTACGCCCTGAGCGGTGCCATCTACATGCTCAAGCAGGAACAGGAGACAGCGCCTGGCTCGGAGTACGGCAGCACGCCCAAGAACTGGGAGTGCGACGTGTGCACCAAAATGTTCACCACCAAGTATTTCCTGAAGAAGCACAAGCGCCTGCACACGGGCGAGATGCCCTACACCTGCCAGTACTGCGCCAGAACCTTCACCTTCCAGCAATCCTATCACAAGCATTTACTCTACCACAGCGAGGTGAAGCCACACGCCTGCGCCATCTGTGGGCGCGCCTTCAAGGAGCTGTCCACGCTGCACAATCACCAGCGCATCCACAGCGGCGAGAAGCCCTTCAAGTGCGAGGTCTGCGGTAAATGCTTCCGGCAGCGCGTCTCCTTTCTGGTGCACACGCGCATCCACACTGGCGTCATGCCCTACAAGTGCGAGCTGTGCCAGAAGACCTTTCGCTACAAGGTCTCGCTGAGAACGCACAAGTGTGCCAGCAACGCTGAGGAGCCCCAGACGCCGGAGCAGCTCATCAAGGCGTTGCTGGAGTCCAATGTGAGCGCGGCCACTGCGCAGGCTGAGCACACGGCGAGCAATGCAGCCATTCACATGAATGGCAGCGACCAGGAGGCGCTGCTCTCGCAAACGATTGATGACATTGTCGTGGAGAGCTGCCAGAAGTTGGGCATTTGCAGTGTGGAGCCGCCGCCGCAACCACAGCCGGTTGTCATGGACAGCGGCGTGCACTTTGACGGGAGCAGCTccccgctgcagcagctgcaaaacTTGCGGCTCTACTCGCCGCAGCAAACGGAGCAGCCCAGCTCGGATGGCGAGCTGTTCCGTAACTTCCTCATGGACGCCACTTAA
Protein Sequence: MCSMSVLCPLCAVPSFASIDALQQRLIKAANGPLACPFPNCKDLFLGLDKLTIHLFSHTSLMSQTEAAPAPASVPVPVVLPQQAAAEAAPAFLPSTNFPAAASPPPTAAVVKRRGKKSRAKPIEQPLPPPATPPARCDICEFNFRNEELRDIHFRLVHENAEIAEPVQGQQQEPYKCHLCSKTFRMKGSLRVHLKVLHTVGAVASATSNNNNNQNNNNSNNNTQTHSSSNTNGHIISATPKISICDRIRHKEASSSNGSIASTANSNTQPYALSGAIYMLKQEQETAPGSEYGSTPKNWECDVCTKMFTTKYFLKKHKRLHTGEMPYTCQYCARTFTFQQSYHKHLLYHSEVKPHACAICGRAFKELSTLHNHQRIHSGEKPFKCEVCGKCFRQRVSFLVHTRIHTGVMPYKCELCQKTFRYKVSLRTHKCASNAEEPQTPEQLIKALLESNVSAATAQAEHTASNAAIHMNGSDQEALLSQTIDDIVVESCQKLGICSVEPPPQPQPVVMDSGVHFDGSSSPLQQLQNLRLYSPQQTEQPSSDGELFRNFLMDAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00516486;
90% Identity: iTF_00545466;
80% Identity: -