Dmer018190.1
Basic Information
- Insect
- Drosophila meridiana
- Gene Symbol
- ZBTB40
- Assembly
- GCA_035045185.1
- Location
- JAWNPF010000206.1:1150779-1152208[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6.1e-06 0.00046 20.7 1.0 2 23 10 31 10 31 0.96 2 11 0.0036 0.27 11.9 3.3 1 23 37 60 37 60 0.95 3 11 9e-07 6.8e-05 23.3 1.1 1 23 148 170 148 170 0.99 4 11 7.9e-05 0.006 17.2 3.8 1 23 176 199 176 199 0.95 5 11 0.0057 0.43 11.3 5.7 1 23 205 228 205 228 0.96 6 11 1.8e-05 0.0014 19.2 3.6 1 22 233 254 233 257 0.92 7 11 0.075 5.7 7.8 6.5 1 23 277 299 277 299 0.96 8 11 5e-05 0.0038 17.8 4.8 1 23 311 333 311 333 0.98 9 11 2.4e-05 0.0018 18.8 4.2 1 23 339 361 339 361 0.97 10 11 9.3e-06 0.0007 20.1 0.3 3 23 370 390 368 390 0.96 11 11 1.3e-05 0.00099 19.6 0.7 1 22 396 417 396 420 0.92
Sequence Information
- Coding Sequence
- atgttgcaaaaattaaaaagtttaaataCCTGTGCGACGTGCGGCAAGTGCTTCTCTAAGCCTGCGTTACTCCGTCGTCATTTGGTTGTGCACAGCACAGAAAAGGCTTTTCCATGCGAGAGTTGCTGCAGTCGTTTCTCTCAAAAAAGCTCACTGCAACGTCACGTACGTATCAAACACGATGTGGCAAAGGAGTGCGACGACTCCGACGTAGCGCAGAATGCGCTGGTGGCCCTAAAGCTGTTAAGAGACAGCCATACGCCTACAGATAATGCAATTGTTAGCCAGACGATAACAGCAGCTTCGTCAGCTACACAGGGCACTCTAGAGGAGAAAGCATCTTGTGATGTAGTGGAACTGAGAGACAAACTCAATCCAGCTGGTGAAGTCCACATGCTCATCACACAGCGCATACTGCGACTGTATCCCAAGAGATGCTACTATGTCTGTGAATATTGCGCTAAAGAATTCAGCAAAAGCTACGATCTGATAAGGCATCGTCGATCGCACACCAAAGAGACGCCCTATCTATGCCATCAGTGCCTCAAGCGCTTTGTCACACAGAGCAAGCTAAACGAGCATCAGAAACGTCTGCATGATAGCGTGCAGAAGCATAAATGCAGCGAATGCATCTGCAGCTTTAGCTCCAAGAGGCAGCTGCAGAATCACTTGTCTAAGGAACATCCCGATATGATCTATAGCTGTAAGCACTGCACTCGCACCTTCCAAAGGAAATCAGCCTTTGAGGCACACATGAAACAAGAAACCCATCCGCTTAGAGGAAAACTCATGGAACTGTTGCCGCAGCCAGTGCTGTCCCAGCGCAGCTTCAAGTGCATCTACTGTGAAAAGCAATTCAAACGCAAATTCAACTGCCGCACGCACATGTTGCTGCACCTACGTCGTCTGATGGACACAAAGCAGTTGAAACACCGCTGCCTGCAATGTAGCAAACACTTCAAGAGACCCAATGACTTGGTTCGACATTTGCTAACTCATTCCAAGCTCAAGCTGCACGTGTGCCACGTGTGTCAGAGACGCTTCACCCTAAAGTCTACATTGGCCAGGCATCTGGAGACGCACAAGCTGCAGCGAAGCAGCGTCAATTGCCAGGTGTGCGGCAGGAGCTATGCATCCAAGAcgtcgctgcagctgcacctgCGTTTGCACACCGGCGAACGTCCCTTTGAGTGTGGAATATGCGGCGAGACTTTTCGCACGTCGGGCCACAGACTGCAGCATATGCGAGCCGAACGGCACAAGAGTGCATCCGCCAATGCACTTATTCTTTGA
- Protein Sequence
- MLQKLKSLNTCATCGKCFSKPALLRRHLVVHSTEKAFPCESCCSRFSQKSSLQRHVRIKHDVAKECDDSDVAQNALVALKLLRDSHTPTDNAIVSQTITAASSATQGTLEEKASCDVVELRDKLNPAGEVHMLITQRILRLYPKRCYYVCEYCAKEFSKSYDLIRHRRSHTKETPYLCHQCLKRFVTQSKLNEHQKRLHDSVQKHKCSECICSFSSKRQLQNHLSKEHPDMIYSCKHCTRTFQRKSAFEAHMKQETHPLRGKLMELLPQPVLSQRSFKCIYCEKQFKRKFNCRTHMLLHLRRLMDTKQLKHRCLQCSKHFKRPNDLVRHLLTHSKLKLHVCHVCQRRFTLKSTLARHLETHKLQRSSVNCQVCGRSYASKTSLQLHLRLHTGERPFECGICGETFRTSGHRLQHMRAERHKSASANALIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00516414;
- 90% Identity
- iTF_00545392;
- 80% Identity
- -