Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 3.5 1.1e+04 -3.5 0.2 34 42 7 16 7 17 0.83

2 3 1.7e-18 5.4e-15 55.1 0.0 1 45 54 99 54 99 0.98

3 3 1.8e-20 5.6e-17 61.5 0.0 1 43 106 149 106 150 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	3.5	1.1e+04	-3.5	0.2	34	42	7	16	7	17	0.83
2	3	1.7e-18	5.4e-15	55.1	0.0	1	45	54	99	54	99	0.98
3	3	1.8e-20	5.6e-17	61.5	0.0	1	43	106	149	106	150	0.97

Coding Sequence: ATGCCCTGCAGAATGCCTTGGAGGCGCTGCGTTCGGGTCAGATATCCGCGAACAAAGCGTCAAAGGCCTTCGGCATCCCATCCTCGACGCTCTACAAGATTGCACGGCGCGAAGGCATCCGCCTTGCGGCGCCCTTCAATGCCGCCCCCGACCACGTGGACGCCCGAGGATCTGGAGCGCGCCTTGGAGGCGATACGGGCGGGTAATACTTCGGTGCAGAAAGCCAGCGCTGAGTTTGGCATACCCACAGGAACACTTTACGGACGCTGCAAACGGGAGGGCATTGAGCTGTCGCGTTCGAATCCAACACCCTGGTCCGAGGATGCCATGAACGAGGCCCTGAACTCAGTGCGCGTTGGCCAAATGTCCATCAACCAGGCGGCCATTCACTATAACCTGCCCTACAGTTCGCTCTACGGCCGCTTCAAGCGCGGCAAATACGACGTGGTTGCCAACACGAGTGGCGTGGCGCTGTTGAACACCTCGGGCAACACCACCGGCAGCATTGAGATTATCGAGCACAGTCAGGAGAATTCGTTGCAtatgttacagcaacagttcccgtacagtcccaggggtccgccgacgccgcagcacatgcagcagcacgtggtgcacatgcaacagcagcagcagcagcagcaacagcagtcgccccatccgggccatcatccgcagcatatgcagcgggacgtggttacatcgagcagccaggtggtgcacagccaacagcagcagcagcttcagcagatctatcagcaccaCgggacgccggagcgtagttga
Protein Sequence: MPCRMPWRRCVRVRYPRTKRQRPSASHPRRSTRLHGAKASALRRPSMPPPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPRGPPTPQHMQQHVVHMQQQQQQQQQQSPHPGHHPQHMQRDVVTSSSQVVHSQQQQQLQQIYQHHGTPERS

Sequence clustering based on sequence similarity using MMseqs2