Dmel020640.1
Basic Information
- Insect
- Drosophila melanogaster
- Gene Symbol
- -
- Assembly
- GCA_000001215.4
- Location
- JANZWZ010000723.1:60973-62597[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.4 1.1e+04 -3.4 0.0 28 33 164 169 163 170 0.87 2 4 1.6e-16 5.2e-13 48.8 0.0 2 45 327 370 326 370 0.95 3 4 0.022 70 3.6 0.0 28 37 400 409 377 414 0.86 4 4 1.2e-20 3.8e-17 62.0 0.0 2 45 436 479 435 479 0.96
Sequence Information
- Coding Sequence
- ATGAATCATCTTAAGTGGATGGGCCACTCATCCACGATAATGGACATCCAGCGCTCGCTGCGTAATGATAATCAGCACTGCGAGGTGGTGCTGGCCTCCAGGGACGGCGTTCGAGTGCGCGCCCATCTATTCGTGCTAAGCACTTGCAGCGAACTGATGCGCAACCTCCTGGTGGACGTTCCGCGCGGCCAGGAGGCAACCATAATGCTGCCCGACATCCGCGGAGATTTGCTGGAGTGCATGCTGTCCTTCATTTACATGGGCGAGACTAGCCTGCCCTCCGCGTCGCTCCCCGAGTTCCTGGAGGCCATTAACCTCCTCGGCATCAAATCTGCCATCAGCTTTGAGTGCAATCCATCGGCTAGTCCACCCAGTGTCGATGTAGAGAACCATTCGTTAGCCGTGGAGTCGGCCAAGTCCATTACAGGACTCCAAATCGCTGAGGCCGAGCTGCTGGACGACGAGGAAGAGCCACATCCGATGGTCTCCGTCCCAGCCACTACACTCGCGGGTTCTCAACACCAGCCCAGCCATTCCAGTCGGTCATTGGAGTACATTGATGTCTACGAGCCGCCGAAGATCACCTACTCCATCGAGCACATGGACGGAAGTTCCAGCGGCAACCAATTTATACTCACCGAGAACACGGGCACTTTCACCATAACGCAGTCAGCATCGAGTTTGTCCAAAATTGAGGCAGATGAAACGGGTACCAGTGGCGCTGAAGTGGACCTGGGCGATGATGACGTGGATGCGGACCTTGCTGAGGATTCTGAGGAGCACGAATCACAAATGATCGACGAGGAGTTCGCGCAAGCCGATCCTCTTATGGAACTAGAAGCTGGTACTGAAATGGACGACGATGACGACGTGCACGACCAACTTGTGGACGAGGAAATAGACGATAAGCCCCGCAAGTTGGGCGGGGAAAGACGCGAATCCTTCGCAGCTCTGAAACGTGAGGTAAAAGACGATATCAACGATGCTTTGGATCTGGCGGCCGACGCGGTTATCATCGAGGGCTTAAGCCTACAAAAGGCCGCCGACCGGTTTGATATCTCCAAGACAGTCCTCTGGAGACGCGTGCGCACTAATCCCGCCTACATGCGAAACAATCGGGAACGACCATCCCTGCAAGAGGCCTACGAGCGACTGAAGAATGGACATTCTTTAAAGAGCATCAGCAGTGAGTTGCAAATCCCCATGTCCACGTTGCACAGACACAAGGTTCGTCTGTCCGCCCAGGGACGCCTGCCCAACTTCGTGTCCTGCCGAAAGCGCGACAATACGCCCAAGGATGAGCTGCGCGACAAATTAGCCAAGGCGGTGCATGCCTGCCTGAATGAGGGAATGTCCCAAAACCACGCGGCCAACCTCTTCGAGATCCCCAAGAGCACGCTCTGGAGACACCTGCAGCGACGCACGACGAGCCAGAATAAAAAGGTCAAGAAGGAATTGAAGGCCAATTACGGAGACGATATGCTAAACTAG
- Protein Sequence
- MNHLKWMGHSSTIMDIQRSLRNDNQHCEVVLASRDGVRVRAHLFVLSTCSELMRNLLVDVPRGQEATIMLPDIRGDLLECMLSFIYMGETSLPSASLPEFLEAINLLGIKSAISFECNPSASPPSVDVENHSLAVESAKSITGLQIAEAELLDDEEEPHPMVSVPATTLAGSQHQPSHSSRSLEYIDVYEPPKITYSIEHMDGSSSGNQFILTENTGTFTITQSASSLSKIEADETGTSGAEVDLGDDDVDADLAEDSEEHESQMIDEEFAQADPLMELEAGTEMDDDDDVHDQLVDEEIDDKPRKLGGERRESFAALKREVKDDINDALDLAADAVIIEGLSLQKAADRFDISKTVLWRRVRTNPAYMRNNRERPSLQEAYERLKNGHSLKSISSELQIPMSTLHRHKVRLSAQGRLPNFVSCRKRDNTPKDELRDKLAKAVHACLNEGMSQNHAANLFEIPKSTLWRHLQRRTTSQNKKVKKELKANYGDDMLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00605685;
- 90% Identity
- iTF_00543180;
- 80% Identity
- iTF_00543180;