Basic Information

Insect: Drosophila melanocephala
Gene Symbol: -
Assembly: GCA_037043625.1
Location: JBAMBD010000523.1:141200-142428[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 7.5e-05 0.0049 17.2 0.5 3 23 227 247 226 247 0.98

2 5 0.003 0.2 12.1 0.3 1 23 253 275 253 275 0.95

3 5 1.8e-06 0.00012 22.3 1.2 2 23 282 303 281 303 0.97

4 5 5.6e-07 3.7e-05 23.8 0.6 1 23 309 331 309 331 0.98

5 5 1.4e-06 9.1e-05 22.6 3.4 1 23 337 359 337 359 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	7.5e-05	0.0049	17.2	0.5	3	23	227	247	226	247	0.98
2	5	0.003	0.2	12.1	0.3	1	23	253	275	253	275	0.95
3	5	1.8e-06	0.00012	22.3	1.2	2	23	282	303	281	303	0.97
4	5	5.6e-07	3.7e-05	23.8	0.6	1	23	309	331	309	331	0.98
5	5	1.4e-06	9.1e-05	22.6	3.4	1	23	337	359	337	359	0.98

Sequence Information

Coding Sequence: atGTCCAATTCGGAAGATACGCTTGAGAAGCGTGCAGAGCATATATGCCGCGTTTGCAATGTGCCATCGTTGCAAACTCTCTCGCTCTTCCAGCCGCACATGATTTCCGATGAGCTGACGACGCTGGCTGCGCAGCTCAGCTACTGCACCAGTCTGCAAGTGCTTGAGGAGGAGCATTTCCTGCCCAGTCACATCTGCAAGCGCTGTGCCGTGCTGCTAACCCAGTTGGTTGGTTTTAGGTGCACAGCGTTACGCACAGATCGTTTGCTGCGCAAGCACAATGCCGAAGCATCAAAATTGGCAAACTCCTCCCGCTCTCCATCGCCAGTTAAATCGCTGTTAGACGTTGTGGATGTTGATTTGGAATTGACGGACACCGATGACTTTGTCTATGTGCTAGATGAAACTGAAACGCTGGTTGTGCAGGATCACCAGCACGAGGTGGAGGatgaggagcaggaggaggaggaggagagggAGGCGGAGGAGGTGCCGGTGCTTGAGGAAATTACCGAAgatgaaattgattttgccGGTGATAAGCTCGCTGAGGTTTTCGAAGTGGACTTTGATCTACCCGACGAGGATTTTGAGGAGCACGAACCGAGCCACACAAAAGCCAACTGCATCAAGTTGCGTGGCACACAGCGACCCAAAACCGCCAATGCCGCCCTCCTGTGTCCCatcTGTGGCAAGCAGCTGAGCACCAGCAACTCGTACAAGTATCACATGCAGCTGCATGGCGACGAGAGGCCATTTGTGTGCAAGATTTGCGGTGATTCATTTAAGACGCGCAATGCGTACGATGGCCACATAACGCTCCATAATCCCAACAATCCCAACAAATGCCGCATCTGTGGCAAGACATATCGGCAGGCATCATCGCTGCGCTCCCACCTGTACAGTCACAGCGGCGTCAAGCCGTTCACCTGCAACATCTGCGGCAAGGGCCTGACCCAAAAGTCCGGCTATAAGAAGCACATGCTCATCCATACGGGCGAAAAGCCGTACTGTTGCGATACCTGCGGACGCAATTTTCGCTATTCCAGCAATCTGATTGCCCACAAGCGTTCCCACACCCGCAAGAGCAGCCCCACCAAAAATGCTTTGGCCCCACTGAAAGCACACCTGAATGCAAACCAACCAAATAttctttaa
Protein Sequence: MSNSEDTLEKRAEHICRVCNVPSLQTLSLFQPHMISDELTTLAAQLSYCTSLQVLEEEHFLPSHICKRCAVLLTQLVGFRCTALRTDRLLRKHNAEASKLANSSRSPSPVKSLLDVVDVDLELTDTDDFVYVLDETETLVVQDHQHEVEDEEQEEEEEREAEEVPVLEEITEDEIDFAGDKLAEVFEVDFDLPDEDFEEHEPSHTKANCIKLRGTQRPKTANAALLCPICGKQLSTSNSYKYHMQLHGDERPFVCKICGDSFKTRNAYDGHITLHNPNNPNKCRICGKTYRQASSLRSHLYSHSGVKPFTCNICGKGLTQKSGYKKHMLIHTGEKPYCCDTCGRNFRYSSNLIAHKRSHTRKSSPTKNALAPLKAHLNANQPNIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00583180;
90% Identity: iTF_00570629;
80% Identity: -