Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 9.1e-07 0.0018 18.4 1.1 14 44 69 96 63 96 0.90

2 6 0.00083 1.7 8.9 2.1 2 41 117 152 116 155 0.89

3 6 0.0016 3.3 8.0 1.4 2 41 145 180 144 182 0.87

4 6 0.0042 8.5 6.7 0.3 2 40 173 207 172 210 0.86

5 6 0.87 1.8e+03 -0.8 0.3 18 27 216 225 211 234 0.81

6 6 0.0011 2.2 8.6 2.5 5 44 232 267 228 267 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	9.1e-07	0.0018	18.4	1.1	14	44	69	96	63	96	0.90
2	6	0.00083	1.7	8.9	2.1	2	41	117	152	116	155	0.89
3	6	0.0016	3.3	8.0	1.4	2	41	145	180	144	182	0.87
4	6	0.0042	8.5	6.7	0.3	2	40	173	207	172	210	0.86
5	6	0.87	1.8e+03	-0.8	0.3	18	27	216	225	211	234	0.81
6	6	0.0011	2.2	8.6	2.5	5	44	232	267	228	267	0.84

Coding Sequence: ATGGAACAAGCGATAGACGTGGGCAGCGTGAAGGAGGAGCACTGCGAGGCAATTTGCAATATGTTCAAAACGCAGGACTGGCAGCTGAGCGTGCGACACAGGGATCTGGGCCTGGTCAAGATCGAGCAGGAGATGAGCTTTGTGTGGCAAGCGAATGGCGCCGCCACACTGGACAACAAGGAGCGTCAGCTGGAGAAGCAAGCGCAAAAAAAGTTCAAGTGCGCCCACTGCTCCAAGGACTTTGCCACCAGCAGCAATCTGAAGGTGCATCTGACGCGATCGCATTCCGGCGATCGCGAGCGTCCTTTCCTGTGCCCCACCTGCCCCAAATCGTTTGCCACCAACGACAACCTGCAAAAGCACATCAGAAGGCATTCGAACGAAAGGACGCTCCAATGCCCGCACTGCCCCAAGGCGTTCGCCACCAAGGACAATCTGCAGAAGCACATCCGCAGGCACTCGAGCGAGCGGACACTGCAGTGTCCGCACTGTCCGAAAGCCTTCGCCACCAACGATAATCTGCAGAAGCACATCCGCAGGCACTCGAGCGAGCGGACACTGCAGTGTCCGATCTGCCCGAAGGCGTTCGCCACGAATGATAATCTGCAGCGGCATATACGCGGCCATACCGGCGAGCGGCCGTTCAAGTGTCCGTACTGCCCGAAGCCGTTTGCCCAGAATCGCGATCTCAAGGCGCACATCCTGGAGCACACCGGCGAGAAGCCGTACAAGTGTCCGCACTGCCCGAAGGCGTGCGTGCGCAGCGAGGGCCTCAAGAAGCACATACTCCGTCTGCACAAGGACATCGAGCAGCCGGAGCAACCGCCGGCGACCAAACAATGGCCGACAGAGGAGAAGTCCTTCATGAACGACAGCCGGGCCAGGGTCTTCATGTACAAACAGGATCTGACCAAGCACACGCGACTGCCCACCGGCGAGGCGTAG
Protein Sequence: MEQAIDVGSVKEEHCEAICNMFKTQDWQLSVRHRDLGLVKIEQEMSFVWQANGAATLDNKERQLEKQAQKKFKCAHCSKDFATSSNLKVHLTRSHSGDRERPFLCPTCPKSFATNDNLQKHIRRHSNERTLQCPHCPKAFATKDNLQKHIRRHSSERTLQCPHCPKAFATNDNLQKHIRRHSSERTLQCPICPKAFATNDNLQRHIRGHTGERPFKCPYCPKPFAQNRDLKAHILEHTGEKPYKCPHCPKACVRSEGLKKHILRLHKDIEQPEQPPATKQWPTEEKSFMNDSRARVFMYKQDLTKHTRLPTGEA

Sequence clustering based on sequence similarity using MMseqs2