Dmay007450.1
Basic Information
- Insect
- Drosophila mayri
- Gene Symbol
- -
- Assembly
- GCA_008042485.1
- Location
- VNJN01008785.1:42314-45316[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.1 7.1 7.2 0.1 1 14 392 405 392 412 0.78 2 8 0.00013 0.0088 16.3 0.7 1 23 769 792 769 792 0.97 3 8 5.7e-05 0.004 17.4 1.3 2 23 831 852 831 852 0.97 4 8 6.9e-06 0.00048 20.3 2.1 1 23 858 880 858 880 0.98 5 8 3.6e-05 0.0025 18.0 0.9 1 23 886 908 886 908 0.98 6 8 0.00061 0.043 14.1 1.5 1 23 914 936 914 936 0.97 7 8 0.011 0.75 10.2 0.0 2 23 943 964 942 964 0.96 8 8 4.6e-05 0.0032 17.7 0.3 1 22 970 991 970 991 0.95
Sequence Information
- Coding Sequence
- ATGCGTCAGCTATGCGGCAGCGTTTATACCTGGAACTGTGCCGGCGAGCTCTATGCCATCGAGTGCTCCCTGTGCGAGGAGCGCCCATTATGCGCCCTCTCCGAGTTCCCAGAGCACATGGAGGTGTGGCACTCCGAGTGGCAGGAATCGGAGGCCGTCTCATCCTCGGATGGTGCCGGCTCGGTAGCCATGCCCGAGGATGAACTCATGCAGGAGGTGCTGGCCGAGCAGCGCATCAGTGGCGAGGACAATGAACTTAAGCAGCTCCTAGTGTGGCAACTAAATGCCatcgaggaggagcagcaggtaGAAGAAGGCGGCGGTGAAGAATTGGCTGGCGAGGCTATGGAAATTAATGAGACCGCCGAACCAGATGAGGATCATATGGCAGATGATGTCGAGGCAACCTCTGGAAAGTGTGGGCAAGCGGAAGAAGAAACGGGAGAATCTGTGGTGTCGTCATCGGTATCCATTCCTTTGCCAGCTATAAGCCTCCAGGATGCTTCGCCAGTTCCCGAGGGCCAGCGCCTGACCACCCAGCATATCCAACGCCTAATCGATCTTTACCGCTCGGAACCACGTCTCTGGAACCAGACGCATTCCGAGTTCCATGACATGGAACTTTGCCGCGAGTCCTGGCGTCGCATCACCGAAGGGTGGAGCGGCTACTGCGGACGCAGCTTCAGCGTAACGGACGTCCGTATCCGTGTATCCACGCTCTGTCAGCGTTTCCTTAAGCAGCGGGAACGCCTGGAGGCGGATGGTGAACTGGATGATGCAGCCAAGTTCGTGCATTTCGACCAACTGAGCTTCCTATGCGAACAGCAATCGTTGCTAAAGCGGCAGCGTCACTATGCCCGCGAGAACCGGCGACTGCTGCAGCTGTACGAGCACTATCCAATCCTCTGGCACAATGCCCACAAGCGAATCCGGTGCCCGGAAATTGTGCGACAGCGACATGAAGCCCATCTCGGGCTCCAGCTTGCGTTGCAGCTGTCCGGTATTAACCTGTCGCCGGTAATCATCCAGCGACGCCTGCAGTCGCTGCGCAAGCGCTATCGCCTCGAGAAGATCAGCTATCTGCACAGTGTGGTCGAGGGCAAGCAGGCGGAGTTCGTCTCGGGATTTGAGCACTACGCTGAGATGGAGTTTCTGCACAAGCACATCGATCCGTATGTATGTGCCGTCTGTGGCAAGATTTTTGAGAATCTGACGGGTCACCAGAGTCATGTCCAGAACAATTGTGAGGTGAGGCGGAGCATGAGCGTGGAAAAGCAGGAGCTGACTggaaaagaggaaaaacaacTGGATAATCATCAAAAGAATCAGTTGAAGGATCAGCTTGACAAAGTATTGACGGAGGTTTTGAAGGACGTAGGTAAAGAGGCTATACCAACCGAGAAAATGGAGTCCCCACGGAAGTCCGAGGAGAGAGAAGCCCTCGCTGGGGATCAGAAGATccccaaagaaaaagaagaatcCGCTGCTGGTTCCCAGCTGCCAAGCTTGGCCGAGGCCTGCGCTGCTGCTCAGCTGGAGGATCCCTGCGAACTGGATACCAGCGGAGAAGTTCTCGAAGCAGAGACCTCCTCCCCCGGCAGCAGTCCGCGTCTTCGCTTGAGCGTCCAAGACACCCAGGACTTGATCGAGCTATATCGCAGCCACGTCTGCCTGTGGGATCCCAATCACCTTGACTATCATGCCCGAAAGCAACGTCGCCTGTCCTGGCAGGCCATTACCAATGAGCTGAACTCGAAGTCGGGACAAAAATACAGCTGGCAGCTATTGCACCGCAAGATCACAGACTATACGAAGTACTATCGGAAGGAGAGGGAACGTAAAATGGAGGAGAagcagccgcagcaacagcagcaggagcctTCAGAGGAGGAAAAAGATAATAAGGATAAGAGCAGCAAATGGAGCTTTTACCTGGAGTTTTCCTTCCTCGACGACGTCCTACCCGTGAGCAGCGAAATTCAGAAGGGCCTGAACCAGCGGGACAGCAACCTGAAGATCATTTCGGTTTATCAGAGTTATCCGCAGCTCTGGTGCACCGATCATCCCGATTACACGAAGCGCCGCCAACGGCAGAGGCAGCTGGAGTCCCTGTGCACCCGACTGCAGGAGGAGAGCAATCTGCAGGTCACCGTGGAGCGGCTCAAGAGTCGCTTAATCGAGTTTCGGTGCCAGTATCGTCACTGCAAGGAGGCACGCATGGAGGCGCTGAAGAATTCGGAGCCCTGGACGCCAGACTACGAGTACTACGAGCCGCTGCGTTTCCTCGAACTGCATGTGGCTCCCTTTCAGTGTCCCAGATGTCCAGCTTCATTTAAACGACGGACAGATTACTTGCAGCACGAACGAAATGTCCATGCCGATGTGGAAAAGTCCCTGGACGGCGAGTTTCGCTACCTTCGCCGGCGAAAGGCCAAGGGAtccaaggaggagcaggaatTGCAGCAACAGGATGCGTTGGAACTGGCCAACGTATGCCACATTTGCGGCCTGAAGTTCTCGCTACGAAACAGTCTGCTCGCCCATCTGCGTCGGCATCTCGGCCAGCGTAGCCACGTGTGCAGCGACTGTCCGAAAAAGTTCTTCAGCTCAACGGCCCTGCGCGTCCATCAGCGCAGTCACACCAAGGAGCTGCCCTACGTCTGTGAGCACTGTGCTCGCGGCTTCGTGAATGCCAGCAAGTTGAACCAGCATGTGAAGCGGCACAGGAACCAGCGTGACTTTCCCTGCAATCGATGCGACAAGGCCTTCTACACGGCGCACGAGAGGGATCGGCATTTGCGGGCCCACCTCAACATCCGGGACAAGGTGTGTCCGTACTGCTCTCGGGCCTTTGTGGTGGGCAGTGCGTACTATGCCCACCTCAATCTCCATCGCAGCGAGAAGCGGTATGCGTGCACCGGCTGTGGCAAGCGATTTGCCCAATACGCCGGCCTCTACAAGCACCGGCGACGCTGTCTGCCAGCTGAAATAATCGAGGAGTAG
- Protein Sequence
- MRQLCGSVYTWNCAGELYAIECSLCEERPLCALSEFPEHMEVWHSEWQESEAVSSSDGAGSVAMPEDELMQEVLAEQRISGEDNELKQLLVWQLNAIEEEQQVEEGGGEELAGEAMEINETAEPDEDHMADDVEATSGKCGQAEEETGESVVSSSVSIPLPAISLQDASPVPEGQRLTTQHIQRLIDLYRSEPRLWNQTHSEFHDMELCRESWRRITEGWSGYCGRSFSVTDVRIRVSTLCQRFLKQRERLEADGELDDAAKFVHFDQLSFLCEQQSLLKRQRHYARENRRLLQLYEHYPILWHNAHKRIRCPEIVRQRHEAHLGLQLALQLSGINLSPVIIQRRLQSLRKRYRLEKISYLHSVVEGKQAEFVSGFEHYAEMEFLHKHIDPYVCAVCGKIFENLTGHQSHVQNNCEVRRSMSVEKQELTGKEEKQLDNHQKNQLKDQLDKVLTEVLKDVGKEAIPTEKMESPRKSEEREALAGDQKIPKEKEESAAGSQLPSLAEACAAAQLEDPCELDTSGEVLEAETSSPGSSPRLRLSVQDTQDLIELYRSHVCLWDPNHLDYHARKQRRLSWQAITNELNSKSGQKYSWQLLHRKITDYTKYYRKERERKMEEKQPQQQQQEPSEEEKDNKDKSSKWSFYLEFSFLDDVLPVSSEIQKGLNQRDSNLKIISVYQSYPQLWCTDHPDYTKRRQRQRQLESLCTRLQEESNLQVTVERLKSRLIEFRCQYRHCKEARMEALKNSEPWTPDYEYYEPLRFLELHVAPFQCPRCPASFKRRTDYLQHERNVHADVEKSLDGEFRYLRRRKAKGSKEEQELQQQDALELANVCHICGLKFSLRNSLLAHLRRHLGQRSHVCSDCPKKFFSSTALRVHQRSHTKELPYVCEHCARGFVNASKLNQHVKRHRNQRDFPCNRCDKAFYTAHERDRHLRAHLNIRDKVCPYCSRAFVVGSAYYAHLNLHRSEKRYACTGCGKRFAQYAGLYKHRRRCLPAEIIEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00488858;
- 90% Identity
- iTF_00488858; iTF_00478207;
- 80% Identity
- -