Dmay011011.1
Basic Information
- Insect
- Drosophila mayri
- Gene Symbol
- PRDM13_1
- Assembly
- GCA_008042485.1
- Location
- VNJN01004042.1:1415189-1420700[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.5e-06 0.00011 22.3 1.6 1 23 212 234 212 234 0.98 2 12 0.026 1.8 9.0 3.5 1 23 240 263 240 264 0.89 3 12 0.077 5.4 7.5 3.3 1 23 269 291 269 291 0.97 4 12 2e-05 0.0014 18.8 0.3 1 23 298 320 298 320 0.98 5 12 0.0092 0.64 10.4 6.3 1 23 326 350 326 350 0.91 6 12 2.8e-06 0.0002 21.5 0.8 1 23 687 709 687 709 0.98 7 12 0.00011 0.0076 16.5 0.9 1 23 715 738 715 738 0.96 8 12 0.025 1.8 9.0 4.3 2 23 745 767 744 767 0.93 9 12 0.00062 0.043 14.1 5.0 1 23 795 817 795 817 0.97 10 12 8.4e-05 0.0059 16.9 0.2 2 23 824 845 823 845 0.97 11 12 1.9 1.4e+02 3.1 2.9 1 23 850 872 850 872 0.95 12 12 0.014 0.97 9.9 0.7 3 22 880 899 878 902 0.90
Sequence Information
- Coding Sequence
- ATGACTAGGCTGTGCCGCACCTGCGGCCAGGGGGCAGAGTATTCAAGGAACCTGTTTGACGAGGAAACTACAGACATTCTGTACGACATACAGAAGCTGACGGGGATTCTGTTAACTAACGAGAATGGCATTCCCACGCGTATTTGTGTGTCCTGCATGCTTGACCTAAAGGAAGCCATCGCTTTTCGGGAGCGTTGCATCAACACGAACAACTTGTGGTTCGAGGAGCAGAATAGTAGTAGTGAGGAATTAGACGCTGCAAACGAGGAGGCGGAGTTAGAAATACTGTCGAGGGTTTCCAGGGAGGACAGCAAGAGAGTAGAGTGCACAACTTCTAATACAACAGAAGAGCTGCTATATCCTTTAGGCACACAGGATGCCAATTCTGCTGATGTCTTGGACCCCTTGATAAGTGAAATAACTGTCAATGAAGGGAACGATTTTCTACATTCAGGCGCTGAGTCTGGTGATTCTGATAACCAGGAATGCGAAGGAATTACCGCACCACCTGCAATACGCAAAAAGCGAGGAAGACCACCCAAAATCCAAAAAAGTGATACATATGAGaagaataaaagaaataagaatGAAAAGGCAAGGGCCAAAAGGATTCAGGCAATAGAGGAGGGCCTGTACTTTTGTGACCAGTGCGGGAAATCCTTCAGCGAGAAGGGCAACTTCAAAGTCCACCTCCAGCGTCACACAGGCGTGAAGAAGTTCGAGTGCAAGGAGTGCGGTCGCAAGGAATTCACACTTCACCTTCTTAATCTGCACATACGAGTAAAGCACCACGGAGAGCTGCCTTATGTGTGCAAGTTCTGTGGCCAAAGATTCGGGAACTGCAACCTTAGGTTGCTTCATGAGCGTAAGCATAACCCGCGACCCCGGCAATACAAGTGTCCTATCTGTGATAAAGGATTTCAGGAAAAACAAACTCTTAAAAATCATGCCTTGGTGCACAGTGGTGAACACCCATTCCACTGTGAACTCTGCCAGGCTCACTTTAATCGAAAAAGCAGTTTACGAACTCATTTCCGGTCAAAGCAGCACTTTAAAAGGCAAAGTTGGAAGTTGCCAGAGCCGAACTTACAAAAGATACGGAGGACGTCTAAAGCAGCTGATAGTGGTGATTCAAAGAGGgaaaacgaaaacgagTTATTCAAAGACAAAGGCGTTGTCAAAATGTCGCCACGAGAGGCCTCCCAAAGACAGGTTAATAAGAAGCTGGTGGAGCTGCTCCTAACGGAGGCAGAGGAAACTGAGGCCGTATTCACTGGAAACAATGCATCCTTTGAAATTTCCACCAACTGGGAAAGCACAGTTGATGAGGAAATACAGCTCGATGAGTGTTTTGATGATGAAAGTAGATGTCGCACTTGCTCCCAATATTTGATGGTAGATGACACTGTCAAGGATCTCTATGATAAGCGAAACATTGAGCTTCTTCATCGCATAAAGCTCGTCACAGGCGTCTGGATAAAAACAGGAGTGGAAGGATTACCCCATTATATATGTGAAGGTTGTCAGGAAACGCTTCAGAAAGCCATCGAATTCCGCAACAATTGTATACAAGCCAACTTAGGGTTTAATCAAATCATACAGAAGGACCCAAGACAAGATTTTGAATTCGGTGACGATATCGAATTAGAACTGGAAAATGTGCTTTACGAGGAGTCATCGAAATGTATTAACAAGGCGTCAGAAATGGGATTATCAGATCTTGAACTTAGCTCTGACAACGAAGAAGAAGGCGAAACTTCACCAGAAAAGGTCATCCTTTCAGGCAAGAAGGCTTCGAGGGAAAGGGAGCATGTTTGTCGTGAGATTGCCAGCATTACCAAATGTAAAACCAAAGaagaaattggaaaaattgATGTCGGAGCCGAAGTCTATAAGGTTGTGCTATCGGAATGCAATCGTGATGAGGAAACAAAGCCCTCTGACCAGGAAGGAAAACCAAAGTATTCGCTTGCAGTGCCGAAACGAAAGAAACCCAAGATGAGCTTGGAAGAAAAAAGGAACATACGCCGCTTAAAAAATATGGCAAAGCCATTCAGTTATGTCTGTGACAAGTGCGGGCACTCATTCCGCATGCCGGACCAACTGCAAATTCACCTACTGCGGCACAACCAAACCAAGAACTTTGACTGCCCGGAGTGCCCAAAGAAGTTTTACAATTCCTATCTGCGAAACATGCATCTCCGAGTGCGGCATAGGGGGGAAAAGCCATGGTCTTGCAATCATTGCAGCGAGTCCTTCTCCAATGCAACCTGCCGCAAAAGACACGAGAAGGAAGTACATGGGGTAGGTCCACGCATCAGCATGAATCGTTCGGAACCAAACAAGCTGAAAGGCCAAAAGGAGGAGACCAAGGACGGTCGACACCATTGCAAACAGTGTGCGAAGACTTACTCCTCGAAACGCACACTAGCTTGGCATATGAACTCCCATACCGGTGAAAGGCCACTTAAATGTAAGGTCTGTAGCAAAGGCTTTGCGGGGCCAAATGCCCTGAGGCGCCATGAAATGACCCACGATAAGTTGCCGTTCCATTGTGAGATCTGTCTCAAAGGCTTCCTTCTACGCTGCCAACTCAAGGAACACCAGGTTGTACACACAGGGGAACGTCCATATTGGTGCGAAATCTGCGACGTATACTATAGATTTAAACGCAGtttaaacaaacacaaaaagagCGACGCGCACAAAAACAAAGTGTTGACCACTCCAATAGATGATATCGAAGAATTTCCGAATGCATTTACTGATATCATAAGCTTCAACACcgattttaacaaaaataacgTATTCATAACTCAGGAAGAAGAAACCGATGGACTTCAGCTAACGCTTACTGAATTTTTAAGCTGCTAA
- Protein Sequence
- MTRLCRTCGQGAEYSRNLFDEETTDILYDIQKLTGILLTNENGIPTRICVSCMLDLKEAIAFRERCINTNNLWFEEQNSSSEELDAANEEAELEILSRVSREDSKRVECTTSNTTEELLYPLGTQDANSADVLDPLISEITVNEGNDFLHSGAESGDSDNQECEGITAPPAIRKKRGRPPKIQKSDTYEKNKRNKNEKARAKRIQAIEEGLYFCDQCGKSFSEKGNFKVHLQRHTGVKKFECKECGRKEFTLHLLNLHIRVKHHGELPYVCKFCGQRFGNCNLRLLHERKHNPRPRQYKCPICDKGFQEKQTLKNHALVHSGEHPFHCELCQAHFNRKSSLRTHFRSKQHFKRQSWKLPEPNLQKIRRTSKAADSGDSKRENENELFKDKGVVKMSPREASQRQVNKKLVELLLTEAEETEAVFTGNNASFEISTNWESTVDEEIQLDECFDDESRCRTCSQYLMVDDTVKDLYDKRNIELLHRIKLVTGVWIKTGVEGLPHYICEGCQETLQKAIEFRNNCIQANLGFNQIIQKDPRQDFEFGDDIELELENVLYEESSKCINKASEMGLSDLELSSDNEEEGETSPEKVILSGKKASREREHVCREIASITKCKTKEEIGKIDVGAEVYKVVLSECNRDEETKPSDQEGKPKYSLAVPKRKKPKMSLEEKRNIRRLKNMAKPFSYVCDKCGHSFRMPDQLQIHLLRHNQTKNFDCPECPKKFYNSYLRNMHLRVRHRGEKPWSCNHCSESFSNATCRKRHEKEVHGVGPRISMNRSEPNKLKGQKEETKDGRHHCKQCAKTYSSKRTLAWHMNSHTGERPLKCKVCSKGFAGPNALRRHEMTHDKLPFHCEICLKGFLLRCQLKEHQVVHTGERPYWCEICDVYYRFKRSLNKHKKSDAHKNKVLTTPIDDIEEFPNAFTDIISFNTDFNKNNVFITQEEETDGLQLTLTEFLSC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -