Dmay008248.1
Basic Information
- Insect
- Drosophila mayaguana
- Gene Symbol
- su(Hw)
- Assembly
- GCA_037075325.1
- Location
- JBAMCG010000053.1:10984191-10987276[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00066 0.045 14.2 2.2 1 20 224 243 224 245 0.94 2 12 2.7e-06 0.00019 21.7 0.4 3 23 296 317 294 317 0.93 3 12 0.0079 0.54 10.8 0.2 1 23 323 345 323 345 0.96 4 12 7.4e-07 5.1e-05 23.5 2.5 1 21 352 372 352 373 0.95 5 12 3.2e-06 0.00022 21.5 0.6 2 23 385 406 384 406 0.96 6 12 0.0001 0.0071 16.8 5.3 1 23 417 439 417 439 0.99 7 12 8e-05 0.0055 17.1 0.9 1 23 445 467 445 467 0.97 8 12 1.6e-05 0.0011 19.3 0.8 1 23 473 495 473 495 0.99 9 12 1.5e-06 0.0001 22.6 3.0 1 23 501 523 501 523 0.98 10 12 0.0055 0.38 11.3 1.1 1 23 527 549 527 549 0.97 11 12 3.7e-05 0.0025 18.2 0.2 1 21 557 577 557 581 0.92 12 12 5.7e-05 0.0039 17.6 0.3 3 23 601 622 599 622 0.96
Sequence Information
- Coding Sequence
- ATGAGCGCCAGCAAAGACGCCGTCGGCGCTGCCCCTCCCACCAGCAAAGAGGCGAGCACTCCAGTCATCAGAGTAATGGACGTGGAGAAAATGGTTTCGCTGAAGGCAAAACGAACTGGCACGCGAATGAAACTACTCAACGATGTGGCCGCAAAGGCCACTCGCCCTAAGCAGGAGAAGCGGACCAGCATCAAGATACTCAATAACGATGAAGCCCAGGGCAGCTCGAAAGCCGGCGAGAAGCGTGCCACGCCCAAAACTGCCAGTCTAGGCGTGAAAATACTAAACGAGAAGCGAATTGGCTCCCCAGCCGCAGCAATGGAAACAGCCAAGATAAAGACATCGcccagcaagaagaagaagatggatCACTACGTCCTGCAGGCCATCAAGAGCGAGAACAGCAAAGCGGACAATACGACAAGCGTCGTGGTTGTCGAGGATGATGACACCATTGACTTCATACTGGCTGACGACGATGTTGAACTCGGCGATGGCGCCAAAGAGAATGGCGAAGAGTTTGTGGTGTCTGGTGTggaggatgatgatgacgacgacgacgatgatgacgacgacgaggacgggCCAGGAGGCGGTGGGAGCGGATCAAAGCGCAAGAGCGGcaccggcaacagcaacagcaacaacgacctCAAAGAAATGGTCGAACACGTGTGCGGCAAGTGCTACAAGACATTCCGTCGCGTGAAGAGTCTGAAAAAGCATTTGGAGTTTTGTCGCTACGACAGTGGCTACCATCTGCGCAAGGCGGAGATGTTGAAGAACCTGGACAAAATTGAGCGCGACGCCGTAGTTATGGAGAAGAAGGACATCTGCTTCTGTTGCAGCGAGAGCTACGACACCTTTCATCTGGGCCACATCAACTGTCCCGACTGTCCCAAGTCGTTCAAAACGCAGACGAGCTATGAGCGTCACATTTTCATCACCCACTCGGAGTTCAACGATTTTCCATGCTCCATTTGCAATGCCAAGCTGcgcagctctgctctgctcaagttgcacgagcagcagcaccagtcCAGGGGCAAACCCTTCGCCTGCAAGATCTGCGGCAAGGACTTTACGCGCTCGTATCATCTGAAGCGCCATCAGAAGTATTCGTCGTGCTCGGCCAACGAAAACGACACCATGAGCTGCAAGGTGTGCGACCGTGTCTTCTATCGCTTAGACAATTTACGCGCCCATCTCAAGCAGCATCTCGGTACCCAGGTGGTGAAGAAACCGGAGTACATGTGCCACGTGTGCAAGAACTGCTTCTACAGTCTGTCCACGCTCAACATTCACATACGTACACATACGGGCGAGAAGCCGTTCGATTGCGATCTGTGCGACAAGAAGTTTTCGGCTTTGGTAGCGCTCAAGAAACACCGTCGCTATCACACGGGCGAGAAGCCCTACACCTGCACAGTGTGCAGTCAATCCTTTGCCGTGAAGGAGGTGCTCAATCGCCACATGAAACGGCATACGGGCGAGCGTCCGCACAAGTGCAACGAGTGCGGCAAAAGTTTCATACAGGCCACACAGCTGCGCACGCATTCCAAGACGCACCTGCGTCCCTACTCATGCTCTTTGTGCATTCTGAAGTTTAAGACAGAGAAACAACTCGAGCGCCATGTCAAGGAGCACTCGCGTCAGAAACGTCCCTCGTTTGCCTGCTCGGAGTGCACACGAAGTTTCCGCACCAGCGCACTGCTCAAGGAGCACATGGACGCGGGCGATCATTCGCCTGCTAAGCCGACTCGGGCTAAACGTTCGGCCAAGGTGATCGAGCGCACGGACTGTGCCATTTGTGACAAGAACTTCGACAGCACTGACACGCTCCGTAATCATATACGCAATGTGCACGAGTGCGATCCGGATGATATTTTCGGTACGGAGCCCCCTGCCAAGCGCAAAGCTAACAAAAAGACCGTCGTGCTGGTCGAGGGCGAAGAGGAAGCGAACGAAGAGAAAGACCAGGATAAGGAAACACCGGCTGCCAACACATCAGCGGGTTCACTCATCTCCAGCAAAACGGACGACAACGGAGTCGTGGTGCGTGAGTTCTTGGTGGATGAGGGCGATGGCAATGCACAGACCATTGTGCTCGAGAACGAGGTGTACACCATTTTGCCCTTGGAGGGTGCGGATAACACAGCCGAGCCGACGACTGAAGGCGGCGATGTCAAGGCCGAGTCTAAGGAGAAGCCACAGTCGACTGTGTCGCCGATTGTCAAGAAGGAGCAACGTAAATCGTTGGCCGCCAGCTTGGCCGCTGCAATTGCGGATAATTTGGATGAGTCGTCAAGCGACGATGAGTTCAACGGCGAGGTGCTCAGTGAGGAGGATATTAAACTGAAGGAGAACATTGCGAAACTAATCGATATGCTGGTCGATCCGCAAACACTCAAGAAGTACGACTGGCCCAACAGCTCCGAGGAGTCGGTGCTGTGCAAGGTCATCGAGAATTGTGGTCACGATCTGGCCAAGGGCAGCGAGGCCTATGCCGAGTTGGATTACGGCAGTCGCATGCGCGAATACTGCAAACTCCTGTTCACTGTGGTCATTCACAATGATTCCATAAAAGCGCTGCTCAACAACTTTCCCATCGACGATGTTATTGAGTATGTGCTAGGCGATGAGGACCAGGACCAAGACCAGGAGCAGGATCAGAATCAGGAGACAGACAAGGGCAAAGAGAAGGAGCATGATGGAGACAAATTGGAGTCGGACACTAGACAGGATGAAGCTGACGAAACTGAGGTTTAG
- Protein Sequence
- MSASKDAVGAAPPTSKEASTPVIRVMDVEKMVSLKAKRTGTRMKLLNDVAAKATRPKQEKRTSIKILNNDEAQGSSKAGEKRATPKTASLGVKILNEKRIGSPAAAMETAKIKTSPSKKKKMDHYVLQAIKSENSKADNTTSVVVVEDDDTIDFILADDDVELGDGAKENGEEFVVSGVEDDDDDDDDDDDDEDGPGGGGSGSKRKSGTGNSNSNNDLKEMVEHVCGKCYKTFRRVKSLKKHLEFCRYDSGYHLRKAEMLKNLDKIERDAVVMEKKDICFCCSESYDTFHLGHINCPDCPKSFKTQTSYERHIFITHSEFNDFPCSICNAKLRSSALLKLHEQQHQSRGKPFACKICGKDFTRSYHLKRHQKYSSCSANENDTMSCKVCDRVFYRLDNLRAHLKQHLGTQVVKKPEYMCHVCKNCFYSLSTLNIHIRTHTGEKPFDCDLCDKKFSALVALKKHRRYHTGEKPYTCTVCSQSFAVKEVLNRHMKRHTGERPHKCNECGKSFIQATQLRTHSKTHLRPYSCSLCILKFKTEKQLERHVKEHSRQKRPSFACSECTRSFRTSALLKEHMDAGDHSPAKPTRAKRSAKVIERTDCAICDKNFDSTDTLRNHIRNVHECDPDDIFGTEPPAKRKANKKTVVLVEGEEEANEEKDQDKETPAANTSAGSLISSKTDDNGVVVREFLVDEGDGNAQTIVLENEVYTILPLEGADNTAEPTTEGGDVKAESKEKPQSTVSPIVKKEQRKSLAASLAAAIADNLDESSSDDEFNGEVLSEEDIKLKENIAKLIDMLVDPQTLKKYDWPNSSEESVLCKVIENCGHDLAKGSEAYAELDYGSRMREYCKLLFTVVIHNDSIKALLNNFPIDDVIEYVLGDEDQDQDQEQDQNQETDKGKEKEHDGDKLESDTRQDEADETEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00495995;
- 90% Identity
- iTF_00502661;
- 80% Identity
- -