Dmac004920.1
Basic Information
- Insect
- Drosophila macrospina
- Gene Symbol
- -
- Assembly
- GCA_035042075.1
- Location
- JAWNLW010000284.1:6516470-6521395[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.001 0.065 13.7 0.5 1 23 141 163 141 163 0.98 2 14 0.00015 0.0096 16.3 1.3 1 23 396 418 396 418 0.98 3 14 2 1.3e+02 3.2 0.7 1 23 424 447 424 447 0.92 4 14 0.22 14 6.3 1.3 1 23 473 496 473 496 0.94 5 14 0.0012 0.077 13.4 1.9 3 23 766 786 765 786 0.92 6 14 0.047 3.1 8.4 1.4 1 23 792 815 792 815 0.98 7 14 0.22 14 6.3 1.7 2 23 852 873 851 874 0.93 8 14 0.0035 0.23 11.9 0.8 1 23 895 918 895 918 0.97 9 14 0.0022 0.14 12.6 0.8 1 23 1125 1148 1125 1148 0.91 10 14 0.0027 0.18 12.3 5.2 1 23 1161 1183 1161 1183 0.97 11 14 0.06 3.9 8.0 0.8 2 23 1189 1211 1188 1211 0.95 12 14 1.9e-05 0.0012 19.1 3.4 1 23 1217 1242 1217 1242 0.97 13 14 0.38 25 5.5 1.0 2 23 1248 1269 1247 1269 0.94 14 14 0.067 4.4 7.9 1.1 1 23 1275 1298 1275 1298 0.96
Sequence Information
- Coding Sequence
- ATGGCGACAAAGCGAGTAAAAACAGATGTCATGgaagtaaattacaaatttttgtGTCGCTGTTGCTTGAAGTCCGAGGCGGAATTCTTCAAGCTGGACTCTCTGACAGAGAGTGTCATAGGCGACAATAACGAGTCCTCACCAAAAATACCACTTATACGTTTACTATTATTCTGTATGCGCACTGAAAATCTACCCGAGCTACCGCAGTATATTTGCGTGGAATGCAGTAAGAGCTTGCAAATTGCTTACTTTTTCATACAAAACGGTCTCAGGGCACACGAAATACTGTGTCGCAAGCTATGCCCTGAGAAGCTGAAAACTACAATGCGTTTTAACGGCCAACAACTCTTTGAGgAGGACGGATATGACGCGAAATTGGACGTGCAAAAGACAAAGCCTTTTAAGGCCGCCGTGCGCCACGAATGCAAAGTATGTGGCGCTATTATATATAATCGAATGGAACTCAAACAACACATTCGCATGCACACAGAGGACATAGAGGAGTCGGAGCATCCGTGCAAGTTATGTTCATTTGTCACGTTTAAAGAGCGTCAGCTACCATTGCATTATCGAAAAGTCCATGGCATGACGGCTGCACCAAATGATCAAATACCTAGAATCCGAAGACCTATGCAAACGTCAACTGCCCTTACAAATGCGGCAACTTCAACAagtacagcagcagctgttgatgATGGTCAGGTAAAGATATGCACACTGGAAGATATGGAGCTGCTGATCCCCACTGTGCTAAGGCCGGAAGACTTCTCGCGTCCCCAACTGGATGCAGATCAACTACGTGATATTGAACAGCAATTGTCAAATTCATTGACGGTTGGCCAGTCGAGTTCAGGTTTTAGCTCTACCGTCATGCCAACTGAACCAACGATAACGACGAGCGGCAGTGGCAATATGAGCATGGGTGCGCAGTTTCTGGTCATGCCCGATGGATCGTTGGAGCAAGTAAATGATGGCGGAGTTGTTTTCGAGTACATCGATGATAGCAAAATTACAACAACGGCCACCAATATAAGCCTGCAGAACTTATTGGATGACTCAAAACCAGCGATGCCTTTTAATGCAATGAATATTGATACGAACTACTCGGTGGGAGATGCTCTGCCACAGATAACTGTGAAGCCACCAATCAGACCAGGTCCAGGATCAATTGCTGCCCTGAAACACAAATGTAAGCTGTGTCCCAAAGCATTTCCCACGATTGCGCGTCTTAAATCTCATCAGTTAACACACAGTCATTTACCCAAATTCTATTGTGATCAGTGCTCCTACTACTCGTTGCGAAGTGCAGATCTCATCCAACATTACAAGGAGGAGCACAAGTCTTCTATTGgtgataataaaaattatcTGGAAAAATCATCCCTATCACTATCAACAGATAGAAGTCGCATTTATTCCTGCGACATGTGCTTATTTGAGACCCCGAGTAGCTTCCAGCTACGAAAGCACTACAGTGAAAAGCATCAGATACAACCCAGCGAGGTACAGCTGCGACCCAGCTGGACCAGTGAGTCCAAGGATATGGGCGTCTGTTCGACAGCTCTCAGTGGCAGTAACCAAAGTCAGATGATGAATTCACAGCCACACATTCCGCTGGGTATTAAATATCCTTCAACGACGGCTGGGCAAATAGCTGAAACCACAGTAACAACCGtgccaacagcaaccacagcgtTGCAGCTAAACCCAccgcagccaacaacaacagctgtggGGACTCATGCTAGTGACTTAAATGTTGTAGTGGATGCAACCTCGTTGTTCTATGAAGCAACGACACCTTCCAAAGCGATAACGGCAGAAACGGAACCAATTGGAACAGAATCCAATGAATTTGCAATATTCCCAGATCCGTCTTTTGCCAACAGCATGACTACAACATCAACTGTTAATGCTGTTACTATTGCTGTTGCACCCACAGGAAATCAAAACGCCAACATTTTTGGAGATATGGAAGATTTTATTGATAATACCGATGTAGCAGCTATATGCACCATACCCGCAGATGATATGCCAGTCGTTGATGGCGatgatattgttattgataacaataatatgaGTTTGGATTTTGATGCTGAGAATCTGTTCGAAGATTTTGAAGAGGATGTTGAAGTTGGCGAGGAAGACGACGAGGATGAGGAAGATGCCGAAAATGATGATGAGAATGACAATAATGAGGCGGCTGCCGATCAAAATTTGTTGCTCACCAGCGATGATGACGACGTTGATGATTTTGATGACGAACAATCGAAGCATCTGCAGAAACCATATTGCATCTATTGTAACAAAAAGTTTACCAGCCAATACAAGTTTGAGAATCATATGTTTGTACATCGCGGGTTGGCGCCGTACCGCTGTGAGCTCTGCACGAATCTTTATAATATGAAGCGTCTGCTTATACGGCACTACAAAACAGTCCATAAGCGAATGCCCACCCGGGACATGGTGCAGGCCAAGGGCGATAAGGTAACAGTGGAGCGAAGTGCCATAGAAAAGCTAAACATCAATGTTGAGAAGCCTCCCATGCTGATGTGTGCTAAATGTCCTTTTGAATGCGAACAGGAGGATGAGATGCGGAAGCATCTCAATGCGCATCATGGCATTAACGATGGCGtttctgTGCATGCTAATGAGGTGTTTATCATTCGCAAATTACCTTATGAGTGTCCACGCTGCATTCGCACATTTGCTGCCAAGCGTACGCTGACTCGACACTTGCAACGGAGTCATTTGGTAGACACAATCATTGAGATGCAGGCTCCTCCATTGACAACTAGctcagcggcaacaacaaccacatcgacagctacaacaacattgcCGAATAATGCCAGCGATGGCTGCGGTGATAATAAAGTAACAATAAGGCAGCAGGAGTCCAGTTTGATGAATACTTTGACGCAGCTTGTTGACTTTAACAGTGCTGAtggcgaaggcgaaggcgatggcaatggcaatggaaaatgCGCAACAACCGAAGATAATACTGAAACTGAGACAGGAACGGAAGAAGCATCCCCTGAAGATGCAACTTTAACAACAAGGTCACGATCAACAACGCCAATAAAATCAGCAACCGCAACACCATCGTCTACGCAAACAACAGATAAAacgccaacaataacaactgtcGACACCACACTATTTCCAACGCCTAcatcatttgattttgatcTTGATTTTATTGGCAATGGATCACATACCGCTTCACTtaagagcaacaacgacaactttaACGGGATACCGAGCGCTAGTCAATTGCTAAATGGCAGCGACAAGCTACTGACAGCTGCGTTAGAGCCATCGCCTGTTAAAGATTTACGTCCGAGGCTGCCAAGGACTCCCATTTTTGTATGCAAGCAATGTAACCAAACATTCGACGAGTTGAGTAAGCTGCAGCAGCACGAATTGGATCAACATTCCAGCGGGACTGTGTCGCCGCGCAGCATTTATCAACATCATTGCGAAATATGCAACACGTCATACCGAACAGTGACGCTGCTTAATTATCATATGAAAAAGCATGCCCCGTGCAAAGTTCAATGTAAACAGTGCCCCCAGGTATGCATGTCTACATCGGAAATGCAGCAACACGTGGAGTCGGAACATGCCAAAATACTGCCCTTCAAATGCGGGATCGATGGTTGCAATAAGACATTCAACTACAAACAACATCTGAAACGTCATCAGAAAGTTTCCCATTCAACCAATCAGTGCATATGTCCCGAGTGTGGGCGCGATATGTTGAACAAGCTCAGCCTGAGGAACCATATGTCGAGCCACAGAGGTTCACTTGTATATAAGTGTCCCAAGTGTGTGCGGATTTATTTGAGACGCAAGGCTTTTCGAAAACACGCGCTGCGTGAACACGAATGGGATTTGACTGATGACGAAATGGACAAAATACATTGCGCGAATGAAACACAGCCCTCGATACAATTACGCGAGCTAAGATCGGTGAAGGCCGATAATGAGCCGTGTGATTAG
- Protein Sequence
- MATKRVKTDVMEVNYKFLCRCCLKSEAEFFKLDSLTESVIGDNNESSPKIPLIRLLLFCMRTENLPELPQYICVECSKSLQIAYFFIQNGLRAHEILCRKLCPEKLKTTMRFNGQQLFEEDGYDAKLDVQKTKPFKAAVRHECKVCGAIIYNRMELKQHIRMHTEDIEESEHPCKLCSFVTFKERQLPLHYRKVHGMTAAPNDQIPRIRRPMQTSTALTNAATSTSTAAAVDDGQVKICTLEDMELLIPTVLRPEDFSRPQLDADQLRDIEQQLSNSLTVGQSSSGFSSTVMPTEPTITTSGSGNMSMGAQFLVMPDGSLEQVNDGGVVFEYIDDSKITTTATNISLQNLLDDSKPAMPFNAMNIDTNYSVGDALPQITVKPPIRPGPGSIAALKHKCKLCPKAFPTIARLKSHQLTHSHLPKFYCDQCSYYSLRSADLIQHYKEEHKSSIGDNKNYLEKSSLSLSTDRSRIYSCDMCLFETPSSFQLRKHYSEKHQIQPSEVQLRPSWTSESKDMGVCSTALSGSNQSQMMNSQPHIPLGIKYPSTTAGQIAETTVTTVPTATTALQLNPPQPTTTAVGTHASDLNVVVDATSLFYEATTPSKAITAETEPIGTESNEFAIFPDPSFANSMTTTSTVNAVTIAVAPTGNQNANIFGDMEDFIDNTDVAAICTIPADDMPVVDGDDIVIDNNNMSLDFDAENLFEDFEEDVEVGEEDDEDEEDAENDDENDNNEAAADQNLLLTSDDDDVDDFDDEQSKHLQKPYCIYCNKKFTSQYKFENHMFVHRGLAPYRCELCTNLYNMKRLLIRHYKTVHKRMPTRDMVQAKGDKVTVERSAIEKLNINVEKPPMLMCAKCPFECEQEDEMRKHLNAHHGINDGVSVHANEVFIIRKLPYECPRCIRTFAAKRTLTRHLQRSHLVDTIIEMQAPPLTTSSAATTTTSTATTTLPNNASDGCGDNKVTIRQQESSLMNTLTQLVDFNSADGEGEGDGNGNGKCATTEDNTETETGTEEASPEDATLTTRSRSTTPIKSATATPSSTQTTDKTPTITTVDTTLFPTPTSFDFDLDFIGNGSHTASLKSNNDNFNGIPSASQLLNGSDKLLTAALEPSPVKDLRPRLPRTPIFVCKQCNQTFDELSKLQQHELDQHSSGTVSPRSIYQHHCEICNTSYRTVTLLNYHMKKHAPCKVQCKQCPQVCMSTSEMQQHVESEHAKILPFKCGIDGCNKTFNYKQHLKRHQKVSHSTNQCICPECGRDMLNKLSLRNHMSSHRGSLVYKCPKCVRIYLRRKAFRKHALREHEWDLTDDEMDKIHCANETQPSIQLRELRSVKADNEPCD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -