Dmac000859.1
Basic Information
- Insect
- Drosophila macrospina
- Gene Symbol
- -
- Assembly
- GCA_035042075.1
- Location
- JAWNLW010000140.1:672525-674783[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.017 1.1 9.7 7.3 1 21 257 277 257 279 0.96 2 12 8e-05 0.0052 17.1 1.4 1 23 285 310 285 310 0.95 3 12 0.00039 0.025 14.9 1.6 1 23 317 342 317 342 0.94 4 12 0.00061 0.04 14.3 4.3 1 23 350 372 350 372 0.98 5 12 0.00019 0.013 15.9 0.1 3 23 381 401 379 401 0.98 6 12 0.0013 0.082 13.3 0.4 1 23 407 429 407 429 0.98 7 12 0.04 2.6 8.6 3.5 1 23 435 458 435 458 0.97 8 12 2e-05 0.0013 19.0 3.3 1 23 464 486 464 486 0.98 9 12 0.00029 0.019 15.4 0.9 1 23 492 514 492 514 0.98 10 12 1.4e-05 0.00092 19.5 0.0 3 23 582 603 581 603 0.96 11 12 3.8e-05 0.0025 18.1 4.0 1 23 609 631 609 631 0.96 12 12 5.5e-06 0.00036 20.7 4.1 1 23 637 659 637 659 0.98
Sequence Information
- Coding Sequence
- atgaatgaaGAACATCGTGCCTCAACTCATACAGTATGTCGCACATGCTTATCCAGATTGCAACATAATGAAATCTATGACCTGTTTGTTGTTCCCGGCCTGGCCAAAAAATTGTGGATGTGCACTTCCCTCTCGGTGGAACATCTGGATGGTTTCCCGAGAAATCTTTGCACCACGTGCTACAACCGTCTTAACGATTTGCATGACTTTCAAAGACAATGCGTGGACTCTGTGCAAAAGTTCAAGGAGTTGGTGACCAGCAACTGCTTCATTATCCGAACAATCCCGGATAACGAGCCTGTTGTCGTGAATGCTGCCATGCATGATGAAGAGGAGCCTGTCGAGGAAGACAATCACATTGCCTTCGACCCACTACTGAGTACCaaaatagagatagataatGAAATGgatgtatttaaaatgattgaaGAAGTCGCTAAGGAACCTGTTGATTTAGAGAATTTGGAGAATGTAGATAAAAAGGAGGATGAAGATTATTTTGACGATATAACTAATACTTTCAATGACGGAAGCGGAAGCGACTTTAATACTGAGGGCAACTCCGGCAGCGATTCCGAAGATGAGATGCCGCTGTCACGCTTACGAAGTAATACCGGAGCAGCAAAGACCAAGACCATTAAGAGTGATAAAGATGAAAGTAAACGAAGACCGATCAAGGGCGAGGCCAAAAAGAGTGATAAAGATGAACCTAAACCAAGAAGGAAACGAAAGCGCATTTCGGttgataaatatgataaacGTCAGTTATTTAAGTGTCACATTTGTACTCAAAAGTTCAAATTGGCAAAGAGTTATGAGAAACACATGAAATGTCACAATGATCAATTGCCATTTCAGTGTACTGTGCCTACGTGCAAGAGGGGCTTTACGACCTCCACAGGACTGCGTCGACACATGGAACATGCGCACACGGAACTATGCGAACTTCATCCATGTACGTTCAAAGGATGCAACGAATCTTTCGCACAAACTCGTGCGCTCACACGGCATTTGAAGAAGGTTCACAATATAGAAAAGCCTATAATCCATCAGTGTTCGGAATGCGACAAAGTATTCCGTTGTCCCATCGGGCTCAAGAAACACATGTATAAACATACTGGCGAAGAGTTGCCATTTGGTTGTACCATATGCCCGAAACGATTTCCGGCAAGCAGCGGACTCCGAGAACATCTATTGAGGCATGCCGGAATCAGGAACTTTATCTGCTCTTACTGCGGCGTGGGCAGAACAACTAAACAGATGTTGGACAGGCATCTATTAACGCACACGAAGGAAAAGAAGTTTAAGTGTGATCATTGTGATCATAGGTCCAACGACTATCAAAGCATAAGAATGCACATCAAAGTGGTACACATGCAGATCAAGCAATATGAGTGTAAGTACTGTCATAAGCTTTTTAGCAGATCTTATGGATTGAGGATCCACGAAAGATTGCATACTCGGGAGGACTGCTTCGAGTGCACAGTCTGTGGAAGACAATTTCTATTTGAGAATAATCTAAAGAAGCATTTAAGGGCTCATGAGAAGCGAACAAATAAGCATTCTGCCGGAAACACAAAAACTGGTGATGAAGCACAGGTGAAATTGACTGAGGCTATCAAGCCGAAAGGTCCACATCGAGTTGAGATCGTAGATATATCTCAGTTGGCTGGTACCTCCGTGAATCCTATTCCATCGGTATCTGTCTTTTCCAGTTTGCCACAAAACGAAGGCCAAAATATTTGTCCAGACTGTGGCAAGGTTTTCAATAGGATTGCCGGCTTGAAGCTCCACTACAAAGTTGTACACCAAAAGATCAAAGACCATGTCTGTCGCTTTTGTCCCAAACGTTTTAGCAGGTCTTCGAATCTTCGACTTCATGAGTTTACACATACGGGGGAGAAGCCTTACGAGTGCAAATTATGCCATGAGCGTTTCAGACAAAGTACAACATTAAAAAAGCATATGTCTGTACACAACAGACCTCGAATGCGAAGCGGTCCAAAGCCTAAGCCCAAGCCTAAGCCTAAGCCGAAGCCAGATTCGAATACAGAAAATCGTTCGGAGCCAAGACTACGACTGAATATGGAGCCATCAAAGAATTATGAACAGTATCAAGATCCAATTGCAGAACATGAGGCAGCAACTGCTCAGTTGATAGCCCAACAGCTGGAAGAGAGTGAGGCTAAGCAAAAGGCCGAAGCCAAAGCCCGGAAGATTCAAGAGGAGGCGTTCGAGCAGCTTCAGAAATTGAAGTAA
- Protein Sequence
- MNEEHRASTHTVCRTCLSRLQHNEIYDLFVVPGLAKKLWMCTSLSVEHLDGFPRNLCTTCYNRLNDLHDFQRQCVDSVQKFKELVTSNCFIIRTIPDNEPVVVNAAMHDEEEPVEEDNHIAFDPLLSTKIEIDNEMDVFKMIEEVAKEPVDLENLENVDKKEDEDYFDDITNTFNDGSGSDFNTEGNSGSDSEDEMPLSRLRSNTGAAKTKTIKSDKDESKRRPIKGEAKKSDKDEPKPRRKRKRISVDKYDKRQLFKCHICTQKFKLAKSYEKHMKCHNDQLPFQCTVPTCKRGFTTSTGLRRHMEHAHTELCELHPCTFKGCNESFAQTRALTRHLKKVHNIEKPIIHQCSECDKVFRCPIGLKKHMYKHTGEELPFGCTICPKRFPASSGLREHLLRHAGIRNFICSYCGVGRTTKQMLDRHLLTHTKEKKFKCDHCDHRSNDYQSIRMHIKVVHMQIKQYECKYCHKLFSRSYGLRIHERLHTREDCFECTVCGRQFLFENNLKKHLRAHEKRTNKHSAGNTKTGDEAQVKLTEAIKPKGPHRVEIVDISQLAGTSVNPIPSVSVFSSLPQNEGQNICPDCGKVFNRIAGLKLHYKVVHQKIKDHVCRFCPKRFSRSSNLRLHEFTHTGEKPYECKLCHERFRQSTTLKKHMSVHNRPRMRSGPKPKPKPKPKPKPDSNTENRSEPRLRLNMEPSKNYEQYQDPIAEHEAATAQLIAQQLEESEAKQKAEAKARKIQEEAFEQLQKLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00537667;
- 90% Identity
- -
- 80% Identity
- -