Basic Information

Gene Symbol
Trerf1
Assembly
GCA_035042075.1
Location
JAWNLW010000489.1:1289070-1303906[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.5e-10 3.9e-07 30.0 0.1 2 45 1797 1840 1796 1841 0.94

Sequence Information

Coding Sequence
ATGGCTGCCATAAATACGGTACCCAAAAGCATACATCTGCCTTTGACGAGTCTCAGCACGCCGCGCGTGTTGATGTGCAGCGCCTCCGTTGGCACTGAGGGGTCCGTGACACTGCAATTGAGGGATACCAATGCTTTggagacaacagcaaccacaacaaagagaacaacaacagcaacagcaacatcagcagcaacaacaacaatagcaacatcaTCGTCATCTGTATCGAGCAATCCAACGAATGGCGTCACTGTGCTTGAGACAtcgtcagcaacaacatcagcgtCAGCATTAGAGAATGCTTTGACTATTGGCTATCCGGATCCGGATATGTTAGCAGATGTTTTGGGCACCATACAGACAGCCTCACTCAAGAACAAGCagatcagcaacagcaaaagaagcagcaacagcaacagcagcagctgcagcagcagcaacagcaacaacaacagcaatagcaatagtaGAAATCACAGCAACAGTGCACCGACAATTCTGAACACAAGCTCTGGCATTCATTTGAATAATCCGAATAAGATTACCATAACGCGTCGAAGTTCGAGCAATAAGATCAGTGTGCAGACGGTGAGCACGTCGACAAACACAACCATTAGCAGTATTAGCGGCAGCAAGACCAACTACATTAAGAACTGTTTAatacgcagcagcagctgcagcaacactGCCACCAATGTCACGACGCTGGCACAGATtatgagcaacagcagcaccagcagcgcTGCCAGTTTACTCAGtcagcataataataatagcaattgcagcaacagcagcaattttaGCAACGCTTCCTCAGTGGgcagcagcattagcattggcagcaacagcagcagcaccaactgcagcaacattagcagcaacagtagcagcaacagcagcaccagcagcagcaacggcaacagcaacgatagcaacagcagcagtggccaCAGTTTAAGTTTTAAGAGCAACGGTCGAAATGTTCCTGGAGTagtcacaacagcagcatacACAAACACCACAGCAACCGGCATTGGCATTGTCACCGTCGACACTGCGCCCCGAAAGAGTCGTCCCAAGCTATCGTCGCCAACACGCCACGGACCGCAGCAGTGCCAGATTTGTAGCAAGATCTTTGGAAATGCCTCGGCGCTGGCCAAGCACAAACTGACGCACAGCGACGAACGGAAATATATTTGTGCGCTCTGCTCGAAGGCATTCAAGCGACAAGATCACTTAAACGGACACATGATGACGCATCGCAACAAGAAGCCTTACGAGTGTAAGGCAGATGGCTGTGGCAAGTCGTATTGTGATGCACGCTCGTTGCGCCGCCATTCGGAGAATCATCATGGAGGCGCGGCAGCGCCCACAAATAACTCACTCTCGCCCGCAGCCAGCACAAGTTGCGGTGGActcagcagcggcagcagcagcagcagcagtggcagcagcatcgGTGTCGGTGTTGCCACCAACTCGTTAAGTCTATCGCCGGCAACGGCTAGCGGAGATGCCAGTTCTCCGGATGGGGCAACCTGCATACGCACCTATATCTCCACAGGCAGCACTGTGGTGGATGCGGCAACGGGAATTGCGCTGTCCGATGAGCAAATCAAGGCCATGAATTTGCCAATTAAGACGGGTGTCACTTTACTCTCGCCAACCACATCGACATCCTCAAATGCATCATCCACAGCATCATCCGCGTCGTGCGCGTCCTctaccaacaacagcaatggtaatggtaacggcaacggcaacggcggcaaTTCCATCATGACCAGTTCACCAACCATAACGCTCAGCGATGGGGCCATGTTGGAGGGCGATGGATTAACGCGGGAGCAGCTTGATCTTATCAGCAAGATCATGCAACAGACGAAGCAAACCAGCGCCCAGGTGACAGTCTCCTCTCCCACCAGCGTCAGCTCCTACAAGATAAATACGGAGACTGCCCCAATGCAAGCCCGACCACGCACTTGGAACATGCAATTGCTCAATAATGCACAGAATGTGACCGTAACCGTAGAGGATGGCACAGATCTGGTTGGATCCGCCACCAGCTCTCCCGACGAGGTCAAGGAGGATGAGCTGAGTCAACAGATTGTGGCTGCCATCAATCCCCACCTGCTCAACATTGTGAAGATCGACAAGCCAGTTGAGTGCAATCTATGTCACCGTAAGTTCAAAAATATACCCGCCCTCAATGGGCACATGCGACTCCATGGCGGTTACTTCAAGAAGGATCCAGAAACCAAGCGCAGCGAGAAGAAGGATGCAAGTGGACCGCCCTTGCAAACTGCCAGCATAGGTGTGCGTGCCCTCATCGAGGAGAAGATCATTAGCAAACGCAAGGACATCACTAAgGGCGCCTTTGTTGTGCCTGCACCACCCAGCAGTTCAGTAAACAACGGTAGTGCTGGGAGTGGTGGCATTGGCAACGGAGGCAGCAACCTGCGACGATCTATCAGCGATTTGGAGAGCTTCCTTAATCCTAAGTGCAGCCTCAGTCAGGCGctagccagcagcagcagcagctgcagttcgAGCACCACCACAGCGGTGCTGCCAGCGGCCACCACTATCAAGAGCAGCAATGGCTTAAGCATCCAGCAAATTGGCCTGCCGCAGAGCATTGAGATCTTCAGCGGGGGCCAGAGACAGCCTAAAACGTTGAGTCTGGGCAGTGGTGCCAATACCATAACAATAACCACCAACAACGTGCCTACCACAACCACTATGAGCGCCCTGACGGCACTAAAGGGCGGCAGTAGCGTCGGCGGTGTCAGCAACCACGTGGATCCCAAGGATTCTACATTGATAGAGCTGCTCAAGCGTGGCACCCGCATTGCCGTGACTTCCAAGAAGTCGCAACTGCAGGCACAAACAAGTACAAATCTGCTGCTGAGTAATGTGTCAGGCACCGAGCTGACCACCATTGGTGGGAGTGTCCAGACGGGGCGACAGATCATCACCAATAACAATCGCACTGTCATCATACCCTCGGATGTGCATGTAGTTTCCACCAAGAGCAAGTTGATCTCCAGCAGCGCCAACTGCAACACCAACactagcagcaacagcaacagcagcaacaatggatGCCCCACGAATAGCATCTCTTTGCCAGATGGAACGCCCCTCTCCTTAACCATAGCTCCGAACCAGGAGAGCCTTGGCGTCATAGGCGAATCAGGTGGCATAACGAGTGGAGGAGGCGGCGTCTATACGGTAACATATACCAGCGATGCAGATGCATCTGATCTCTTTGACGATGCTGAGGTGTACAATGTCTCGGATACGGAGATGCTGCTGCAAACTGTGGACACCATGGAGCTGCTGAACGATGATGAAGACGAGGTACACAAAAGCGAACATTCCGATGACTTTGCTCTGCTCAGCTCAGAGGCCGGGGGAGACCACACCCAGCTGGTCAAATTGGAGCCAGAGTCGCTgcagagcaacaataacaatgccatCAGCCATAACATTAATCAGACTACGCCGCTGCCCACCTTCCAGCAATTCCATTCCAAGGAGCTCATCATGCAGAATAGCTCGCAGATCCAGGCGATTGCCAATATGCGGGGAAGCAGCACTTTAGGTGCGCTAGCCTCACCCCTACACTCACCCCTCGCCTATCCGACGCCACCGTCCAGTCACGAGAATGTGGCCCAATCCTCACCCTTTATCGAGGATGCCGCTGCTCAGTTTGTCGACGCAAATCACACGTTCTTCGGCGACAAGACGGATTTCTCTCATGTCTACTTTAAGACGGACGAAAGCAATTCCATGCAGCAGCTCAGTGATAACGACAATGAGAAGATACTGAAATTGAAGTCCGTGCTGGAGGAGAGTAGCTTCGATCCGTCCATCAAGGTGGAGGATCTACTAAATAGCACCGAGGATGATGCTGAGTGTGATCTGCGTGAATTTGCCGAGACAAATCTCTCGTTTCTCGATGAGGATCAAGAGTTTCTTAACGATTCACGTAATGCTACCTCCCCGCTCTCCGAGTCCTTCTTCACCAGCGGCATTGGCTCAGCCGAGGATGTCAAGCAGGTGCTCCGCGAAGTGCTGCCCGATGAGAAtatgcagttgcagctgagcagcgagcagcaagGCGAGAATATCATAGATCTCTACTATCTGCCGGGACTGGGACTGCAGTCACAAATGATGTCCAACTCCGATGATCCTCTGCTGTCGTCCTCGCCACGAGAGTTTGGCCAACAGCGACAGGGGATGCACGCAGCCACATCGAATACAGTTCAGGCCATGGAGCCAACTGTGCTTTATGAGCAACATAcaccgcagcagcaacagccgcagcagcaacagcaacagcagcagcagcagcaacagccgccacaacagtcacagcagcagcaacaacaacaactgcaacagcagcaacaatcaccgcaggaacagcagcagctgcaacaacaactgctgacACAACCACAACCTGCCCTTCATCTCgaacagccgcaacaacagcagccagagTTCATGTTGCCCACCTACACACCTGCGTCGTGTCAGGCTCAGTATCTTGACAGCAGCCAGCAATCTATGACGTTGCAGCCACTAAATAGCCTGTTGCAGCCATTGCTTTATGCCactggcagcggcaacagtaGCTCGAGTGAGAAACAAGAGTTCACCACACTGCTTACCACCAGTTCAGCAGGTCATGCCACAGTTCTGGATGCAAGTCTGCTCTTTGCCTGCGGAGACAGTGGCAATAAGCCTGTTCCTGCCCCTGCATTGCCAGCAGCAGTGCCCCCTCCAGTGGCAAGTGTCTCCAATCTGCAGCCATTATCGAATCAAACAAATTCCATACTTAAGCGTCGCCTGCGCTCCAATGGTACGCAGGATGTGCATAAGTTCTCTAAATTCCACACACTTTCCCCGCATCGTTCCAAGCTGCGTAAACCATCCCGCACCCATTATACTCCAGCTCCCATTCTGAATCCCGATCGTAAGGGAACTGGACTCTACTGCAATGTGCGTAAACAGCTCGGCCAGGGCATGTTCGATGTCTTCGACGATGACTTTGGTGATCCTGTGGGTCTCGTGGACTTCTCCGACGAGTCCAAGGTTAATCTTGGCTCGACCTATCAAGCCCAGATACCCGCCTGCAAGCTGCCGGATGAGTACAACAATGATACACCGATGGGCGCCGATCTGATGTGGGACCCCAGCATTCAGCTTGACGATAAGATACTTATGCGTTATATAGATCTCAGCAAATCATCTGCTGTCCCCATGGGCAGCCATTCGGAGGAAGTTGCTCTTCAAACGCTTCTCGATGCCAAAGGCAACTCGGCGGCGGCTGTTCTAACGCTGTTGCAAACCCAGTCCAGCGCATTCCAGATGAAATGGACTGCCTACGAACTGGAGCAGTTTCTGCGAGGCCTTGAGAAGCATGGCAAAAGCTTTGGCAAAATTGCCAGCGAGCTGCAAACAAAGACATCGGGCGAATGCGtgcaaatgtattatttttggaAGAAGCTTTGTGTGGACTACAAGGTGTCTCATCTGAAAATGGAGCCAGTTACTCCCAGCACTCCGACTGTGGAACAGAAGCCCTACGTGTGCGAAATTGCCGACTGCTCGGCGAGCTTCAGTTCAAAAGCGGCATTGCATGGTCATGTTCGCATACACGCTTATGGTAGAAATgccagtagcaacaacaacaacaacaacaacaacaatcagcatGCCACGGCAGTtagtgccaacaacaaccatagttccagcaacagccacaacaacaacgcatgCGCGACCCCGTCTAGCAGCATTaacgcaataacaacaacagcaaccattACGAACACCAATGGCAATAACACCACcgtcaacaacaatagtaacaaccacaacaacaacaacaacaattccatGACAGCTGCCAGCTCAACTTTAAACTCAACGCTACTGCTGTCAGGCggagcaacaacttcaacagcaacagcaacaaccaaagacaacagcagcaacacgggcaacatcaacagcaactcaatcaacaacggcaacaattcCAATGTTGCCAAGGATACCGAATTCCCCTGCAAGGTGTGCGGCAAGGTCTTCAATAAAGTTAAGAGCCGCAGCGCCCATATGAAAACTCACCGAGTGCAGGATGCGGAACAATCATCCAATTCCAAACATCAATCGTCCTCCAATGGGAATCTGTCTGTGGCTGTAGCTCTAGCTGCCTCAGCGGCATCCTCGGCAGCGTCGGTCATGGCCTCTACATCCTCATAG
Protein Sequence
MAAINTVPKSIHLPLTSLSTPRVLMCSASVGTEGSVTLQLRDTNALETTATTTKRTTTATATSAATTTIATSSSSVSSNPTNGVTVLETSSATTSASALENALTIGYPDPDMLADVLGTIQTASLKNKQISNSKRSSNSNSSSCSSSNSNNNSNSNSRNHSNSAPTILNTSSGIHLNNPNKITITRRSSSNKISVQTVSTSTNTTISSISGSKTNYIKNCLIRSSSCSNTATNVTTLAQIMSNSSTSSAASLLSQHNNNSNCSNSSNFSNASSVGSSISIGSNSSSTNCSNISSNSSSNSSTSSSNGNSNDSNSSSGHSLSFKSNGRNVPGVVTTAAYTNTTATGIGIVTVDTAPRKSRPKLSSPTRHGPQQCQICSKIFGNASALAKHKLTHSDERKYICALCSKAFKRQDHLNGHMMTHRNKKPYECKADGCGKSYCDARSLRRHSENHHGGAAAPTNNSLSPAASTSCGGLSSGSSSSSSGSSIGVGVATNSLSLSPATASGDASSPDGATCIRTYISTGSTVVDAATGIALSDEQIKAMNLPIKTGVTLLSPTTSTSSNASSTASSASCASSTNNSNGNGNGNGNGGNSIMTSSPTITLSDGAMLEGDGLTREQLDLISKIMQQTKQTSAQVTVSSPTSVSSYKINTETAPMQARPRTWNMQLLNNAQNVTVTVEDGTDLVGSATSSPDEVKEDELSQQIVAAINPHLLNIVKIDKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDPETKRSEKKDASGPPLQTASIGVRALIEEKIISKRKDITKGAFVVPAPPSSSVNNGSAGSGGIGNGGSNLRRSISDLESFLNPKCSLSQALASSSSSCSSSTTTAVLPAATTIKSSNGLSIQQIGLPQSIEIFSGGQRQPKTLSLGSGANTITITTNNVPTTTTMSALTALKGGSSVGGVSNHVDPKDSTLIELLKRGTRIAVTSKKSQLQAQTSTNLLLSNVSGTELTTIGGSVQTGRQIITNNNRTVIIPSDVHVVSTKSKLISSSANCNTNTSSNSNSSNNGCPTNSISLPDGTPLSLTIAPNQESLGVIGESGGITSGGGGVYTVTYTSDADASDLFDDAEVYNVSDTEMLLQTVDTMELLNDDEDEVHKSEHSDDFALLSSEAGGDHTQLVKLEPESLQSNNNNAISHNINQTTPLPTFQQFHSKELIMQNSSQIQAIANMRGSSTLGALASPLHSPLAYPTPPSSHENVAQSSPFIEDAAAQFVDANHTFFGDKTDFSHVYFKTDESNSMQQLSDNDNEKILKLKSVLEESSFDPSIKVEDLLNSTEDDAECDLREFAETNLSFLDEDQEFLNDSRNATSPLSESFFTSGIGSAEDVKQVLREVLPDENMQLQLSSEQQGENIIDLYYLPGLGLQSQMMSNSDDPLLSSSPREFGQQRQGMHAATSNTVQAMEPTVLYEQHTPQQQQPQQQQQQQQQQQQPPQQSQQQQQQQLQQQQQSPQEQQQLQQQLLTQPQPALHLEQPQQQQPEFMLPTYTPASCQAQYLDSSQQSMTLQPLNSLLQPLLYATGSGNSSSSEKQEFTTLLTTSSAGHATVLDASLLFACGDSGNKPVPAPALPAAVPPPVASVSNLQPLSNQTNSILKRRLRSNGTQDVHKFSKFHTLSPHRSKLRKPSRTHYTPAPILNPDRKGTGLYCNVRKQLGQGMFDVFDDDFGDPVGLVDFSDESKVNLGSTYQAQIPACKLPDEYNNDTPMGADLMWDPSIQLDDKILMRYIDLSKSSAVPMGSHSEEVALQTLLDAKGNSAAAVLTLLQTQSSAFQMKWTAYELEQFLRGLEKHGKSFGKIASELQTKTSGECVQMYYFWKKLCVDYKVSHLKMEPVTPSTPTVEQKPYVCEIADCSASFSSKAALHGHVRIHAYGRNASSNNNNNNNNNQHATAVSANNNHSSSNSHNNNACATPSSSINAITTTATITNTNGNNTTVNNNSNNHNNNNNNSMTAASSTLNSTLLLSGGATTSTATATTKDNSSNTGNINSNSINNGNNSNVAKDTEFPCKVCGKVFNKVKSRSAHMKTHRVQDAEQSSNSKHQSSSNGNLSVAVALAASAASSAASVMASTSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00533739;
90% Identity
iTF_00537743;
80% Identity
iTF_00537743;