Basic Information

Insect: Drosophila lutescens
Gene Symbol: -
Assembly: GCA_037075285.1
Location: JBAMCF010000381.1:1581408-1582424[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00052 0.042 14.6 5.3 1 23 100 122 100 122 0.98

2 8 3e-05 0.0024 18.5 4.3 1 23 128 150 128 150 0.99

3 8 9.7e-05 0.0078 16.9 2.6 1 23 154 177 154 177 0.96

4 8 7.9e-05 0.0064 17.2 4.2 2 23 188 209 187 209 0.97

5 8 8e-08 6.5e-06 26.6 1.7 1 23 215 238 215 238 0.98

6 8 0.013 1 10.2 0.6 1 23 246 268 246 268 0.97

7 8 0.00028 0.023 15.4 2.3 1 23 274 296 274 296 0.98

8 8 6e-05 0.0049 17.5 1.0 1 23 303 325 303 325 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00052	0.042	14.6	5.3	1	23	100	122	100	122	0.98
2	8	3e-05	0.0024	18.5	4.3	1	23	128	150	128	150	0.99
3	8	9.7e-05	0.0078	16.9	2.6	1	23	154	177	154	177	0.96
4	8	7.9e-05	0.0064	17.2	4.2	2	23	188	209	187	209	0.97
5	8	8e-08	6.5e-06	26.6	1.7	1	23	215	238	215	238	0.98
6	8	0.013	1	10.2	0.6	1	23	246	268	246	268	0.97
7	8	0.00028	0.023	15.4	2.3	1	23	274	296	274	296	0.98
8	8	6e-05	0.0049	17.5	1.0	1	23	303	325	303	325	0.98

Sequence Information

Coding Sequence: ATGGATAGGGGGAATGGCGAAAAAGTGGAACCCCTGCTAGAACCAGAAGTGTGCAGACTatcagaggaggaggaggatcgaGTGCCCGAAGTGAAGACGGAAGTGAACCCAGAAGACTGGCCAGAGAATGATGATACCTATAGAGAACACTTCTTTGAATGCGCTGTGAAGAACGAGCCACTCGAAGAGGAGCCATTGGAAGAGGATACATTTCAAGAACTAGACTATGATATAAATCAGTCCGAATGTCAAGTAAAAATCGAAGAGACTGAAGACGATTTGGAGGGTGAAAAGCCCTTCAGGTGTTTCCACTGCTCGGAAACCTTTCGGAAGTTAAGATATCTGAAGGTTCACCTGCAAAATCACCCGGGCAAAGGAGTCTACAAGTGCCACACTTGCCCAAAGACCTTTCCCGAGATCGGCAAGCTGAAGAGGCACCTTCACACGCACACCCGACCGCATGAGTGTCCCACCTGCGGCAAGAGGTTCGGAGATGGGTGCAATTTTCGCAAGCACATAGCTTCGCAACATGTGCGAAAGCCCCTGGAAAATAAACCAGTTAGCTGTTCCCTCTGCCAGAGGAATTTCCAGAATAACACCAGTCTCAAGCGACACATGCACACGCACAAGAAGGACCTGCCCTTCAAGTGCACCCAGTGCCCCAGGACCTTTGGCACGAACACCAATCTCAGGCGGCACATTCGATCGCTGCATGCGGAGGCAGAAGAACGACCCTTCAAGTGTGCCCAATGCCCAAGCACTTTTGCATTGTCCCAAAGCTATGATCGACATATTATGTTTCATGCTAAGGAAAACTCCTTTAAGTGTTCACAGTGCTCACAGgtttacaaaaagaaaagtcGTCTCATCTTGCACTTGAAATTGCACTCTAAAGACTCCTTGAAGTTCAAGTGTCCCCTATGTCCGAAGAGCTATGTATATGAAAAAGTTTATCGCTTACACATGAGATATCACCAAAAGGGCCACACCGAAAGCCCCGGAATTCCTAAGAGCTGA
Protein Sequence: MDRGNGEKVEPLLEPEVCRLSEEEEDRVPEVKTEVNPEDWPENDDTYREHFFECAVKNEPLEEEPLEEDTFQELDYDINQSECQVKIEETEDDLEGEKPFRCFHCSETFRKLRYLKVHLQNHPGKGVYKCHTCPKTFPEIGKLKRHLHTHTRPHECPTCGKRFGDGCNFRKHIASQHVRKPLENKPVSCSLCQRNFQNNTSLKRHMHTHKKDLPFKCTQCPRTFGTNTNLRRHIRSLHAEAEERPFKCAQCPSTFALSQSYDRHIMFHAKENSFKCSQCSQVYKKKSRLILHLKLHSKDSLKFKCPLCPKSYVYEKVYRLHMRYHQKGHTESPGIPKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -