Basic Information

Gene Symbol
Trerf1
Assembly
GCA_037075285.1
Location
JBAMCF010000074.1:285312-297881[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.4e-10 3.9e-07 30.4 0.1 2 45 1729 1772 1728 1773 0.94

Sequence Information

Coding Sequence
ATGGCTGCCATAAATACGGTACCAAAGAGCATCCACCTGCCATTGACAACTATTAGCAGCGCGCCGCGCGTGTTGATGTGCAGCGCTTCCGTGGGCACCGAAGGATCCGTGACTCTGCAACTGCGGGATGCGAACGCCTTGGAGGCAGCGGCCACGAAaacagcatcagcatcagcggCAGCCACATCAACGACGTCACCGAATGGCGCTGCCAGTGCGCCAGCGTCGGCGCTAGAGAATGCGCTGAACATTGGCTATCCGGATCCGGAAATGTTGGCAGATGTCTTGGGCACCATTCAGACAGCCTCTCTCAAGAACAACAACTCAATCACAGCAGCAACTTCAAGCAATAGCTCAGCCAAGTCGGCGGGCAGCAATCATCTAACGAACCCCAACAAGATAACCATAACCAGGCGCAGTGTCCAGTCGGTCAGCACCTCAACGAATACGAGCATCGGTGGCAGCGGCAAGACCAACACCAGCTACATCAAGAACTGCTTGatccgcagcagcagctgcagcaacacGGTCACCAATGTCACAACATTGGCGCAGATTatgagcaacagcagcacgaGCAGCGCGGCCAGTTTACTCAACCAGCATAATAATAACAGCAATTGCAGTAATAGCAGCAACTTTAGCACCGCCTCCTCAGTGGGCAGCAGCATTAGTgtcggcagcaacagcagcagcaacagcaactgcagcaacggcagcaacagcagcaacagcaatagcaacagcaacgacagcaacagcagcagcggcggtgGACACAGTTTGAGCTTTAAGTGCACCACCGGACGGCATGTTCCCACTGGTGGATTGAGCTCATCATCATCGGGGGCATCCACGAATGGTAGCGGTACCGTCAGCGGTATCGACATCATAAGCGTCGAGGCGCCGCGCAAGAATCGCCCCAAATTATCATCGCCAACGCGTCACGGACCGCAGCAGTGTCAGATTTGTTGCAAGATCTTTGGAAATGCCTCGGCGCTGGCCAAGCACAAACTGACGCACAGCGACGAGCGGAAATACATCTGTGCGCTCTGCTCGAAGGCATTCAAGCGGCAAGATCACTTAAACGGACACATGATGACTCATCGGAACAAGAAGCCTTACGAGTGTAAGGCGGATGGCTGTGGCAAGTCCTACTGCGATGCCAGATCCTTGAGGCGCCACTCGGAGAATCACCATGCCGGCGGagcagccacgcccaccaccAGCCACCAGTCGCTctcgcccaccgcccacagtTCAAGCGGCACGAGCGGCAATAGTAGTGTGGCCGCCAGCTCCTTGAGCCTCTCACCGGCCACTGCGAGCGGAGATGCCAGCTCCCCGGACGGAGCCACCTGCATTCGCACCTACATTTCCACGGGCAGCTCGGTGGTGGATGCAGCCACTGGGATCGCCCTGTCGGAGGAACAGATCAAGGCCATGAATCTGCCCATCAAGACGGGCGTGACCCTGCTGTCGCCCACCACTTCGACCTCCTCGAATGCCTCCTCCACGGCCTCGTCCGCCAGCTCAACGCTTTCCTCAGCGAGCTCGGGATTGGGATCGGTATCGGGTTTGGGTTCCGGATCAGTTTCGATGGCCCCCTCACCATCGATGTCCGCCAGTTCGCCCACCATCACCCTCAGCGATGGCATGAATCTCGAGGGCGAGGGCCTGACCCGCGAACAGTTGGATCTCATCAGCAAGATTATGCAGCAAACGAAGCAGACGAGTGCCCAGGTCACAGTCTCCTCGCCCACCAGTGTCAACTCCTACAAGATCAACACCAGCTCGTCGCCATCGCAGAACAGACCGCGCACCTGGAACATGCAATTGCTAAATAGCGCCCAGAATGTGACCGTCACCGTTGAGGACAACTCGGAGATGGCCACCCCCTCCTCCAACTCACCCGTGGAggtcaaggaggaggagctgagCCCTCAGCTAGTGAGCAACATGAATCCCCACCTGCTCAACATCGTGAAGCTCGACAAGCCGGTCGAGTGCAATCTCTGTCACCGCAAGTTCAAAAACATACCCGCCCTCAATGGGCACATGCGCCTGCACGGCGGCTACTACAAGAAGGATCCGGAAACCAAGCGCAGCGAGAAGAAGGACTCCAGTGGTCCGCCACTGCAGACGGCGAGCATTGGGGTGCGCGCCCTCATCGAGGAGAAGATCATCAGCAAGCGCAAGGACATGACTAAGGGCTCCTTTGTGGTTCCGGCGCCACCGCACAGCAGTGGAACCACCACCACCCTGCGTCGATCGATCAGCGACCTGGAGAGCTTCCTCAACCCGAAGACGAGCACCAGCAGTCACAGCCAGACAATGACCACTACTACGGGCACCACCACAGCCGTCCTACCGGCGGCTACGACGATCAAGAGCAGCAACGGACTCAGTATCCAGCAGATCGGCCTCCCGCAGAGCATCGAGATCTTCAGCGGAGGCCAGAAGCAGGCGAAGACCCTCAATCTGGGCAGCGGCACCAATACAATCACCATAACCACCAACAATGTACCCACCACCACGACGATGAGTGCTCTGACTGCCTTGAAGGCGGGCGGCACCATCAGTGGCATTTCCACGGCCACCAATACGGATCCCAAGGATTCCACACTCATCGAGTTGCTCAAGCGGGGCACTCGCATAGCGGTCACCTCGAAGAAGGCCCAATCCCAATGCCAAACGGGAACCGGCATAATGATGACCTCCAGTGGGGTGGCCACAAATGCAGTGGGTGCCGTCACCGAGTTGACCACCATCGGTGGCAGTGGCCGGCAGATCATCACCAACAATAACCGCACCGTGATCATACCCTCCGATGTCCAGGTGGTGTCCACCAAGAGCAAGCTGAACAGTTTGAGCAGTCTGGTTAAGAGTAATATCACCAGTAGTTCCTCGGGAAATCTTTCACTGGCCGATGGAACGCCTCTTTCACTCACCATTGCTCCCAACCAAGAGATCAcgggaggcggaggaggaggctgtGCCAGCGGAACAGGAAGTGTGATTACCAGCGGAGGCGGTGGCGTCTACACGGTGACCTACACCAGCGATGGAAGCGATCTATTCGACGATGCCGAGGTGTACAACGTTTCGGACACCGAGATGCTGCTGCAGACGGTGGACTCCATGGAGCTGCTCAACGACGAGGAGATCAAGAGCGAACATTCCGAGGACTTTGCCCTGCTGAGCGAAGCGGGCGACAGTGCGCACACCCAGCTGGTGAAACTGGAGCCGGAAAGTGGGCCAGCCAACGCCGGAAACTCTGGAAACGGAACCATGTCCGGTTCGAGTACCACAACGCCGTTGCCCACCTTCCAGCAATTCCATTCCAAGGAGCTGATCATGCAGAACAGTTCGCAGATCCAGGCGATAGCCAGCATGCGAGGTGCAAGTGGAGCCAGCGGTGTCTTGGCCTCGCCGCTGCACTCGCCACTGGCCTATCCCACCCCTCCCTCGAGTCACGAGAACATGGCCCAGAGCTCACCGTTTATCGAGGATGCAGCTGCCCAGTTTGTAGATGCCAGCAATACGTTCTTCGGCGACAAAACGGACTTCTCGCACATCTACTTCAAGACGGACGAGGGCGAGGCCACCATTGAGCAGCTTAATGAGCACGACAACGAGAAGATCCTGAAGCTTAAGTCGGTGCTAGAGGAGAGCAGCTTCGATCCCTCTATCAAGGTCGAGGATCTGCTAAATGGAACCGACGATGACACCGAGTGTGATCTGCGCGAGTTTGCCGAGACGAACCTCTCCTTTCTGGACGAGGATCAGGAGTTCCTGAATGACTCGCGAAATGCCACCTCGCCGCTCTCGGAGTCCTTCTTCACGAGCGGCATTGGCTCCGCGGAGGACGTGAAGCAGGTTCTGCGGGAAGTCCTGCCTGATGAGAATATGCAGCTGCAGCTCACAAGCGAGCAGCAGGGCGAGAACATCATCGATCTCTACTATCTGCCCGGCTTGGGCCTGCAATCCCAAATGATGCCCAATTCGGAGGACCCCTTGCTCTCCTCTTCACCTAGGGAGTTTGGCCAGCAAAGGCAGCAGATGGCTCTGCAGGCCACCCTGGAGCAGCCACTTCAGGGAAGCATCTACcaacagcaggagcagcagcaacaggagtcacagcagcaacagcaacaccagcagcagcagcagcaggagcaaccacagcaacagcaacaattgATGCTGCCCCAGCAACCACTAAATCAAACGGAGTCCCTGCCAACAGCGGTggtccagcagcaacagcagcagcagggtgACTTCATGCTGCCCCTGGTGGGTGGCCATGGATTCACTCAAGTTACCAGCCAAACCCAGTACCTGGACAACGGCCAGGGGGCAACCAGCATGACGATGCAGCCCCTCAACAGCCTGCTGCAACCACTGCTCTATGGTGGGGCAGGCACTTCCAATGGCAACGCCTCAGCCGGGGGCAATGAATCGCTGCTCACCACCACCGATTGCCAAATGAATGCCAATCAAGGACAAATCGATGCGGGCCTGCTGTTCGCCTGTGGCAATGCGACAACCACGACAGCAACCATGGCGAACAGACCGCTAAGCGGTCTCCTGCCGAATCCGCCGAGTGTGGCCAATCTGCAGCCCCTGTCCAACCAAACCAATTCCATACTGAAGCGCCGCCTGCGCTCCAATGCTCCCCAGGAGACGCACAAGTTCTCCAAGTTCCACACTCTGTCGCCGCATCGCTCCAAGCTGCGCAAGCCATCGCGCACCCACTACACGCCCGCACCCATCCTAAATCCGGATCGCAAGGGCACCGGCCTGTACTGCAATGTGCGCAAGCAGCTCGGGCAGGGTCTGTTCGATGCCTTCGACGATGACTTCGGGGACTCGGTGGGCCTGGTGGACTTCTCCGATGAGTCCAAGGTCAATTTGGGCTCAACGTATCAGGCGCAGATACCCAGCTGTCGGCCGATGGACGAGGCAGCAAGGGATTCGGCGGGCGCCGAGCTGATGTGGAATCCCGAGGTGCAGGAGGACGACAAGATCCTGATGCGCTACATTGATCTCAGCAAGTCGTCGGCCGTGCCCATGGGCAGTCATTCCGAGGAGGTGGCGCTCCATACGCTACTCAAGGCCAAGGGCAactcggcggcggcggtgctCAGCCTGCTGCAAACGCAATCGGGCGCCTTCCAGATGAAGTGGACCGCCTACGAGCTGGAGCAGTTCTTGCGAGGTTTGGAGAAGCACGGCAAGGACTTTGGCAAGATTGCCAGTGAGCTGCAGACAAAATCCTCCGGCGATTGTGTGCAAATGTACTACTTCTGGAAGAAGCTCTGCGTGGACTACAAGGTGTCGCACTTGAAGATGGAGCCCGTGGTCGTAATTGCTCCCGCTGTGGAGAAGCCCTATGTCTGCGAGATCGCCGACTGCTCAGCGAGCTTCAGTTCGAAAGCAGCGCTGCACGGTCATGTCCGCATACACGCTTATGGCCGCAgtgccagcagcaacaccaacaacagcagcagcaacactagTAACAGCGGCAACATGCAACAGACCTCGGCAAATAGTGCCAATTCCTCCAatagcaacaccaacagcagcagcagctacgCATGTGCAACACTAgccggcaacagcaacagcagcaatacCAATAACCCAACCAGCAATGCcacgccagcagcagcagtacaCGCCAGCAACATGGGTCAAAACGGCAGCAATTGCAGTACCAATGTAAATGcaacgacagcagcaacatcggcgcTTTCAGCCACGCCCAAATTGGAGGCGGGCAATGGCAACACTGCGTTGCCAATTGCCAAGGAGGGCGAGTTCCCCTGCAAGGTGTGCGGCAAGGTCTTCAATAAGGTGAAGAGTCGCAGTGCGCATATGAAGACGCACCGCGTCCAGGACTCAGATCAAAAACACCAGCTGAACCATCAGACTGGAACAGGATTGACCACCGTCGCCTCATCAACCATCACCGCCCCATCGTAG
Protein Sequence
MAAINTVPKSIHLPLTTISSAPRVLMCSASVGTEGSVTLQLRDANALEAAATKTASASAAATSTTSPNGAASAPASALENALNIGYPDPEMLADVLGTIQTASLKNNNSITAATSSNSSAKSAGSNHLTNPNKITITRRSVQSVSTSTNTSIGGSGKTNTSYIKNCLIRSSSCSNTVTNVTTLAQIMSNSSTSSAASLLNQHNNNSNCSNSSNFSTASSVGSSISVGSNSSSNSNCSNGSNSSNSNSNSNDSNSSSGGGHSLSFKCTTGRHVPTGGLSSSSSGASTNGSGTVSGIDIISVEAPRKNRPKLSSPTRHGPQQCQICCKIFGNASALAKHKLTHSDERKYICALCSKAFKRQDHLNGHMMTHRNKKPYECKADGCGKSYCDARSLRRHSENHHAGGAATPTTSHQSLSPTAHSSSGTSGNSSVAASSLSLSPATASGDASSPDGATCIRTYISTGSSVVDAATGIALSEEQIKAMNLPIKTGVTLLSPTTSTSSNASSTASSASSTLSSASSGLGSVSGLGSGSVSMAPSPSMSASSPTITLSDGMNLEGEGLTREQLDLISKIMQQTKQTSAQVTVSSPTSVNSYKINTSSSPSQNRPRTWNMQLLNSAQNVTVTVEDNSEMATPSSNSPVEVKEEELSPQLVSNMNPHLLNIVKLDKPVECNLCHRKFKNIPALNGHMRLHGGYYKKDPETKRSEKKDSSGPPLQTASIGVRALIEEKIISKRKDMTKGSFVVPAPPHSSGTTTTLRRSISDLESFLNPKTSTSSHSQTMTTTTGTTTAVLPAATTIKSSNGLSIQQIGLPQSIEIFSGGQKQAKTLNLGSGTNTITITTNNVPTTTTMSALTALKAGGTISGISTATNTDPKDSTLIELLKRGTRIAVTSKKAQSQCQTGTGIMMTSSGVATNAVGAVTELTTIGGSGRQIITNNNRTVIIPSDVQVVSTKSKLNSLSSLVKSNITSSSSGNLSLADGTPLSLTIAPNQEITGGGGGGCASGTGSVITSGGGGVYTVTYTSDGSDLFDDAEVYNVSDTEMLLQTVDSMELLNDEEIKSEHSEDFALLSEAGDSAHTQLVKLEPESGPANAGNSGNGTMSGSSTTTPLPTFQQFHSKELIMQNSSQIQAIASMRGASGASGVLASPLHSPLAYPTPPSSHENMAQSSPFIEDAAAQFVDASNTFFGDKTDFSHIYFKTDEGEATIEQLNEHDNEKILKLKSVLEESSFDPSIKVEDLLNGTDDDTECDLREFAETNLSFLDEDQEFLNDSRNATSPLSESFFTSGIGSAEDVKQVLREVLPDENMQLQLTSEQQGENIIDLYYLPGLGLQSQMMPNSEDPLLSSSPREFGQQRQQMALQATLEQPLQGSIYQQQEQQQQESQQQQQHQQQQQQEQPQQQQQLMLPQQPLNQTESLPTAVVQQQQQQQGDFMLPLVGGHGFTQVTSQTQYLDNGQGATSMTMQPLNSLLQPLLYGGAGTSNGNASAGGNESLLTTTDCQMNANQGQIDAGLLFACGNATTTTATMANRPLSGLLPNPPSVANLQPLSNQTNSILKRRLRSNAPQETHKFSKFHTLSPHRSKLRKPSRTHYTPAPILNPDRKGTGLYCNVRKQLGQGLFDAFDDDFGDSVGLVDFSDESKVNLGSTYQAQIPSCRPMDEAARDSAGAELMWNPEVQEDDKILMRYIDLSKSSAVPMGSHSEEVALHTLLKAKGNSAAAVLSLLQTQSGAFQMKWTAYELEQFLRGLEKHGKDFGKIASELQTKSSGDCVQMYYFWKKLCVDYKVSHLKMEPVVVIAPAVEKPYVCEIADCSASFSSKAALHGHVRIHAYGRSASSNTNNSSSNTSNSGNMQQTSANSANSSNSNTNSSSSYACATLAGNSNSSNTNNPTSNATPAAAVHASNMGQNGSNCSTNVNATTAATSALSATPKLEAGNGNTALPIAKEGEFPCKVCGKVFNKVKSRSAHMKTHRVQDSDQKHQLNHQTGTGLTTVASSTITAPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00605509;
90% Identity
iTF_00537027;
80% Identity
iTF_00537027;