Basic Information

Gene Symbol
snpc-4_1
Assembly
GCA_037075285.1
Location
JBAMCF010000090.1:1666139-1668456[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 3.5 4e+03 -1.7 0.1 22 46 198 224 198 224 0.74
2 5 1.2e-08 1.4e-05 25.4 0.0 1 44 230 274 230 276 0.93
3 5 2.5e-05 0.029 14.8 0.1 2 45 286 333 285 334 0.85
4 5 5.9e-05 0.068 13.6 0.0 2 46 341 386 340 386 0.87
5 5 2.4e-08 2.8e-05 24.4 0.0 3 43 394 435 392 438 0.95

Sequence Information

Coding Sequence
ATGGATGTGGAGGATCTGCGGCTAAACCAGCAGCAGTTGCTGGGCGAGATTTCCGCCCTGCTGCAGACCACCGCGGCACCAAGTGACACCAACGCCCTGCTGCTGAACCAGGAGCTCCAGCGACGCCTTCTTCAAGTCCGGTCCAGCATTCTGTCCATGCTGCAAACAGTTCGAGATCGCTTCGCCCGGAACGAGGAAATCCTGGTGCGCCGGCTAAGGCCACGCTCCCAATTCGGACCAGATTCCCTTAACCTTAACCTGAGCGGGGCAATCCTGCGAAAGGGCACGTTCCGCTTTAAGGGCAACTTGTTCTTCCGGGACATCGACGGCCGGAGCTGTCCCAACAACGAGGACTACGAGGCGCGCTGCCACACGGAGATGTTTCCCACCGACTTCGACATGCACTCCCGCCACGTATGGACATTGCTGGACAAAAAGAACGTCATCATGGGGATCAAGCAACAGTTACTTGACCACAGCAGCCACAGGATGAACGGAATGCCCAGCGGCAGCCTAAAGCGAAAGCCAACCGAACGGCACCTACAAACACTGGCCAGTCTACTAGCGACGGCGGATAGCAGCTTCAGGATTGACTGGAACCAGATCAGCACCCTGGACTTGGAGTATCGGCACTCTCCGTATAGCTGTGAGGCCATGTGGCGGGTCTACCTGAGGCCAGATCTTAAGCGCGACGATTGGTCGGTGGATGAGGATGAGACCCTGCTGGCAGTGGCCTCTGCAAACCGGATGCAGAACTGGGAGCTGATTGCCGCGTCGCTAAACATGCGTTCCGACTACCAATGCTTCGTCCGCTTCACCACCGCACTGCGTCACCTGCTGGAGCCAAAGGGCAGCAACCGCTGGAGCGACGAGGATAACGAACGATTACGAGAGCTGGCTGAGAGGAATACGGCAAACGGCGTAATTAACTGGAGGAAGGTAACGGAGTATTTCCCGGACAAGTCCAAGTCGACGCTAATTGGACGTTACTACTATGTGCTGCATCCCAGCATCAGTCACGAGGCCTTTAGTACGAAAGAGGACATGATGCTATTCGCCGCCGTGGAGGAGTACAATGGCAAGTTTCACTGCTTCCCGCGCTCCCTCTTCCCAAACCGATCTTTGACCCAGCTGCGGACTCGCTACCACAATGTTCTGGCACAGCGAAACAAGACCGACTCCTGGTCGGTGCAGGACGACACCCGGCTGATGAGCTTCGTCACCCAACACGGGGCCTCCCAGTGGCTGAACTGTGCTACGTTCTTGGGCAATCACTCGCGGACCAGCTGTCGGACGCGCTTCCTAGTCATCAAGAAGTTCCTTGAACAAAATCCCAATGCGAAAGTTGAGGACTTACCTCGTCGTCGAACGAAAAAGGTGCCGGTCGTCACTTCTGATAACTGGGCGCAGCGCTTGCAAGAGTGGCAAGAGGACCCGGAGTCTTTAGTTACGGCCGAACAGATTAAAGGGTCACGGGTACGAAAACCCAAATCTAAAAAGGCGAAGATCGAGCGTAAGGCAGACACCACGACTAGGCTTTCGAAAGTCGACATAGAACTCGGCGAGTTTTTCAAATACAGCTACAATTTGCCACTTACAATTCCGACAATTTTCCCACTTCCGAAAGACGCCCACAACCTCACATGTGTGGTCAGAGCTCTCGCATATAAGCCACCAATTCGTCCCTCGCTCTTACAGAACATCTACATGCCAAATGAACTCCTAAGGTGCTACAATAACATGATGAGAAACCTGCCCGATGAGAAAAGTGATTCAAAAAGTGCACTTCTTCCGCCAAACTGGTCCACCATGATGGGGTTCCGGGCCATGTGCATTCTTTCCGGTGATTACCGCAAACAGGGAAGGGAAGCCAATAGTTTCGACTATAATGGATCCGCACCGCCCATCCAGCTTTTCCGCCAGCGGTTGCGAGCTCTCTTCTACCGCACCACCCTTCTCAGTCGCTTGGAGTCGCAGCTGTTTTCGGATTTACCCGCAGCCTTAGTGTCCTTGCCACGACCCACTCCAGTTAATGCGAGCATGGGTATCAATGTCGACTTGAACAGTCCCGAAAAGGAACAAAATAAGAATCTAAAATCGGAGCCGCTCAGCGAAGACGAGATGATGAATATGAATACAGTCAAGCAGGAGGTGGAAATGGAATATATAGTTCCATAA
Protein Sequence
MDVEDLRLNQQQLLGEISALLQTTAAPSDTNALLLNQELQRRLLQVRSSILSMLQTVRDRFARNEEILVRRLRPRSQFGPDSLNLNLSGAILRKGTFRFKGNLFFRDIDGRSCPNNEDYEARCHTEMFPTDFDMHSRHVWTLLDKKNVIMGIKQQLLDHSSHRMNGMPSGSLKRKPTERHLQTLASLLATADSSFRIDWNQISTLDLEYRHSPYSCEAMWRVYLRPDLKRDDWSVDEDETLLAVASANRMQNWELIAASLNMRSDYQCFVRFTTALRHLLEPKGSNRWSDEDNERLRELAERNTANGVINWRKVTEYFPDKSKSTLIGRYYYVLHPSISHEAFSTKEDMMLFAAVEEYNGKFHCFPRSLFPNRSLTQLRTRYHNVLAQRNKTDSWSVQDDTRLMSFVTQHGASQWLNCATFLGNHSRTSCRTRFLVIKKFLEQNPNAKVEDLPRRRTKKVPVVTSDNWAQRLQEWQEDPESLVTAEQIKGSRVRKPKSKKAKIERKADTTTRLSKVDIELGEFFKYSYNLPLTIPTIFPLPKDAHNLTCVVRALAYKPPIRPSLLQNIYMPNELLRCYNNMMRNLPDEKSDSKSALLPPNWSTMMGFRAMCILSGDYRKQGREANSFDYNGSAPPIQLFRQRLRALFYRTTLLSRLESQLFSDLPAALVSLPRPTPVNASMGINVDLNSPEKEQNKNLKSEPLSEDEMMNMNTVKQEVEMEYIVP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00507541;
80% Identity
-